Summary
Overview
Work History
Education
Skills
Certification
Languages
Timeline
SoftwareEngineer
Amaralingeswararao Ankatha

Amaralingeswararao Ankatha

Cary,NC

Summary

Automated analysis of high-throughput sequencing data from Illumina Hiseq and NovaSeq systems, improving quality, throughput, and cost per sample. Proficient in SQL, C#, object-oriented analysis and design, and windows application development Familiar with cloud computing platforms (AWS, Microsoft Azure, GCP) and version control with Git Strong experience in software development using agile methodologies with Microsoft Visual Studio, including design, implementation, testing, documentation, delivery, and maintenance Familiar with professional software engineering best practices and the full software development life cycle Experience in developing LIMS and distributed/scalable systems, as well as handling and analyzing production-level data from Illumina Miseq, Hiseq, and NovaSeq systems Skilled in creating SQL scripts, database queries, performance tuning, and visualizations for automation, as well as collaborating with laboratory, bioinformatics, and clinical teams to solve production problems Able to convert business requirements into technical specifications and designs, estimate effort, and lead a team of 4 Self-motivated, able to solve problems independently, prioritize tasks, and manage multiple projects. Detail-oriented, organized and meticulous employee. Works at fast pace to meet tight deadlines. Enthusiastic team player ready to contribute to company success. Complex problem-solver with analytical and driven mindset. Dedicated to achieving demanding development objectives according to tight schedules while producing impeccable code.

Overview

11
11
years of professional experience
1
1
Certification

Work History

Bioinformatics Software Engineer

GreenLight Biosciences, Inc
02.2022 - Current
  • As a hands-on professional with experience in Azure cyberinfrastructure, I have saved $5300 per month through the implementation of cost optimization techniques such as a tiering system, resource reorganization, and deallocation
  • I have also managed Azure VMs, disks, snapshots, storage accounts, blobs, file shares, SSL certificates, custom domains, role-based access controls and SLUM cluster based on Azure Cycle Cloud
  • I have set up single sign-on and assisted with data transfer needs through the use of cloud-based SFTP and Azcopy
  • In addition, I have provided new cloud resources for my team and solved access problems, including the renewal of SSL certificates
  • I have also created custom domains and implemented role-based access control, and have revisited our backup policy to ensure the security and reliability of our cyber infrastructure
  • Developed a PHP-based web application that utilizes PostgreSQL as the database and Azure file share as the backend data store for downloading large files
  • I have enabled in-house NCBI Blast functionality, Expression Viewer, and Jbrowse functionality within the application
  • The application is docker-based and has CI/CD enabled through Azure Container Registry and is deployed using an Apache web server with OpenID connect and Okta
  • The application is also SSL-enabled and was deployed using an Azure Linux VM
  • Expertise in code management using Github, including the implementation of Github Actions for continuous integration and deployment
  • Proficient in work tracking with JIRA and generating automated release notes
  • Skilled in documentation using Confluence and the creation of user manuals with Scroll View and Scroll Port
  • Proficiency in a variety of technical tools and platforms, including Power BI, Labvantage LIMS, Jekyll, Shiny Proxy, Air Byte, Snowflake, Visual Studio Code, Linux, and shell commands
  • Experience establishing ETL processes and working with data analysis and visualization software

Software Development Engineer

HistoGenetics LLC
09.2015 - 02.2022
  • Expertise in developing data algorithms, software systems, and computational approaches for analyzing biological systems, including DNA and protein sequences
  • Experience creating databases, developing business-critical applications with user-friendly interfaces, and supporting scientists and clinical geneticists in processing DNA sequencing data
  • Strong skills in designing and developing automated process solutions, creating test plans, optimizing software, and integrating tested components into functional systems
  • Developed automation and integration for Illumina multiplexing amplicon data analysis, resulting in a 6x reduction in experiment cost
  • Created modules for automatic typing of CCR5, ABO-RH, and KIR genes, leading to new business opportunities.

Software Engineer

HistoGenetics India Pvt. Ltd
07.2011 - 08.2015
  • Expertise in developing business-critical applications, gathering requirements from end-users, troubleshooting and optimizing existing applications, and migrating web-based ASP applications to .Net
  • Skilled in testing and documenting program development, logic, coding, and corrections, as well as writing programs that interact with bio-robotics for automation
  • Developed the Allele Map tool for searching and highlighting sequences in available alleles, with features including region-wise and boundary search, dynamic coloring, automatic sequence alignment for insertions and deletions, auto navigation, multiple searches, and optimization for use in designing primers in the laboratory.

Education

Bachelor of Engineering (Honors) - Electrical and Electronics

Birla Institute of Technology and Science

Skills

  • SKILLS & INTERESTS
  • Skills:
  • Programming: SQL, C#, Python, PHP, R, C, PERL, HTML, CSS, JavaScript, PostgreSQL, Assembly level programming for x86
  • Software/Libraries/Technologies: NET Framework, Microsoft Visual Studio, WinForms, WCF, WPF, DevExpress UI Libraries, MS Office, Illumina Miseq Reporter, Jira, TFS, BioEdit, XML, JSON, FASTQ, FASTA, CSV, REST, SOAP Web Services, Microsoft Azure, Docker, GitHub, Apache HTTP Server, Actions, Jekyll, Linux, Visual Studio Code, Okta Single Sign-On, Shiny Proxy, Confluence
  • Platforms: Windows, Linux, macOS, Microsoft Azure, Illumina Miseq/Hiseq/NovaSeq, Git, AWS, GCP
  • Relevant Courses
  • PluralSight, Managing Microsoft Azure Storage
  • PluralSight, Microsoft Azure Architect Technologies
  • PluralSight, Getting Started with Docker
  • PluralSight, Building Your First R Shiny Application
  • PluralSight, Getting Started with GitHub Actions
  • LinkedIn Learning, Microsoft SQL
  • Code and Quality Standards
  • Software Development Standards
  • Resolving Obstacles and Dependencies
  • Data Structures and Algorithms
  • Programming Languages: Java, C#, Net, Python
  • Application Design and Development
  • Verbal and Written Communication
  • RDMS Development and SQL
  • Continuous Integration Systems
  • Strong Communication and Interpersonal Skills
  • Technical Requirements
  • Solution Recommendations
  • Cross-Functional Collaboration
  • Complex Problem-Solving
  • Data Storage and Retrieval
  • Code Development
  • Eagerness to Learn New Technologies
  • Troubleshooting and Testing
  • Software Design
  • Cost Estimation
  • Object-Oriented Programming (OOP)
  • Organization and Time Management
  • Requirement Documentation
  • Source and Version Control: Git, GitHub
  • Project Management
  • Team Collaboration
  • Integrated Development Environments
  • Web Programming
  • Microsoft NET
  • Design and Development
  • Build Releases
  • Database Programming
  • Scripting Languages: PHP, Python, JavaScript
  • Software Applications
  • Software Deployment
  • Requirements Gathering and Analysis
  • Project Documentation
  • SOAP and Restful Web Services
  • Linux Environments
  • HTML and XML
  • Fluency in C, C, C#
  • Engineering Standards
  • Algorithm Implementation
  • UNIX

Certification

Server 2019 Essential Training LinkedIn Learning, Object Oriented Programming with C# LinkedIn Learning, Learning Python LinkedIn Learning, Git Essential Training: The Basics LinkedIn Learning, HTML Essential Training LinkedIn Learning, CSS Essential Training LinkedIn Learning, JavaScript Essential Training LinkedIn Learning, Learning REST APIs

Languages

English
Full Professional
Hindi
Professional Working
Telugu
Native or Bilingual

Timeline

Bioinformatics Software Engineer

GreenLight Biosciences, Inc
02.2022 - Current

Software Development Engineer

HistoGenetics LLC
09.2015 - 02.2022

Software Engineer

HistoGenetics India Pvt. Ltd
07.2011 - 08.2015

Bachelor of Engineering (Honors) - Electrical and Electronics

Birla Institute of Technology and Science
Amaralingeswararao Ankatha