Summary
Overview
Work History
Education
Skills
Affiliations
Key Technical Skills
Publications
Presentations
Research
Timeline
Generic

Anna-Kay R. West

Knoxville

Summary

Organic chemist with a strong background in organic synthesis, protein chemistry, and enzymatic assay development. Conducted research to develop chemical and biological tools for probing specific enzymatic pathways. Detail-oriented, innovative, and proficient in managing several research projects. Experienced in effective communication and working efficiently with teams.

Overview

11
11
years of professional experience

Work History

Graduate Research

University of Tennessee
Knoxville
10.2018 - Current
  • Designed, optimized, and conducted chemoenzymatic reaction assays to facilitate photoreactive group loading onto carrier protein, improving experimental workflows.
  • Developed and optimized enzymatic fluorescence assay to quantify dimethylallyl pyrophosphate (DMAPP), enhancing accuracy of measurements.
  • Performed circular dichroism (CD) analysis on protein samples to assess protein stability and conformation.
  • Performed dynamic light scattering (DLS) experiments on protein samples to assess the hydrodynamic radius and particle size distribution of the sample.
  • Performed Western blotting analysis for the detection of larger molecular weight protein, DEBS1TE.
  • Designed plasmids and primers for Gibson assembly, DNA cloning, and protein expression in yeast and bacteria.
  • Design gblocks with various restriction sites and construct DNA plasmids for DNA cloning.
  • Perform restriction cloning, DNA transformation, and DNA gel electrophoresis. Proficient in reaction optimization and data analysis.
  • Perform E. coli electrocompetent cell preparation.
  • Perform protein expression and purification techniques (manual purification of histidine-tagged recombinant proteins using Ni-NTA resin).
  • Operate preparative high-performance liquid chromatography (HPLC) for purifying organic compounds.
  • Operate Q-TOF LC-MS for the analysis of small molecules and biomolecules (proteins).
  • Literature searching skills and computer skills (Excel, PowerPoint, EndNote, Zotero, Benchling, Clustal Omega, Ncbi BLAST, ChemDraw, Mnova, Adobe Illustrator).

Graduate Research

University of Tennessee
Knoxville
12.2020 - 12.2022
  • Executed DNA amplification and cloning techniques, including PCR setup, transformation, colony PCR, troubleshooting, and data analysis to support research objectives.
  • Design DNA plasmid and primers for DNA amplification and cloning.
  • Synthesized three diazirine-based photo-crosslinking probes to study protein interactions.
  • Utilized DART mass spectroscopy and NMR spectroscopy to characterize diazirine-based compounds, contributing to understanding of protein interactions.
  • Perform protein expression and purification techniques, including protein synthesis and equipment operation (Fast protein liquid chromatography).
  • Conducted literature searches and utilized software tools (Excel, PowerPoint, Endnote, Sciwheel, Snapgene, ChemDraw, Mnova, J5 DIVA, Ncbi BLAST, Clustal Omega) to enhance research efficiency.

Graduate Research

Ball State University
10.2018 - 07.2020
  • Analyzed photophysical properties of synthesized tetrazole-based push-pull chromophores using ultraviolet and fluorescence spectroscopy, contributing to understanding of material behavior.
  • Characterized synthesized push-pull chromophores using NMR and mass spectroscopy, ensuring accurate assessment of molecular structures.
  • Conducted DFT calculations to optimize properties of synthesized push-pull chromophores.
  • Synthesized several tetrazole-based organic push-pull chromophores for use in materials chemistry.
  • Literature searching skills and computer skills (Excel, EndNote, DFT calculations).

Undergraduate Research

Ball State University
05.2015 - 08.2017
  • Conducted imaging experiments on Atomic Force Microscope, executing tip mounting, laser alignment, sample preparation, image analysis, and optimization on BioAFM viewer software to enhance imaging accuracy.
  • Conducted AFM imaging of RNA nanoparticles on mica and gold substrates to analyze structural properties.
  • Executed AFM characterization of hexane thiol-protected gold nanoparticles, assessing their properties to contribute to research on nanoparticle applications.
  • Performed imaging experiments on Scanning Tunneling Microscope, executing tip fabrication, mounting, sample preparation, and image analysis to investigate surface properties.
  • Trained incoming research assistants on how to properly operate the Atomic Force Microscope, including tip mounting, laser alignment, equipment setup, and imaging.

Education

Doctor of Philosophy - Organic Chemistry

University of Tennessee
Knoxville, Tennessee
05-2026

Master of Science - Chemistry, concentration - Organic

Ball State University
Muncie, Indiana
12-2020

Bachelor of Science - Chemistry, concentration- Biochemistry, Biology, concentration-Pre-Medical Preparation

Ball State University
Muncie, Indiana
05-2018

Skills

  • DNA Amplification
  • Polymerase Chain Reaction
  • Gene Editing
  • Molecular Cloning
  • DNA Assembly Techniques
  • Synthetic Biology Techniques
  • Plasmid construction
  • Primer Optimization
  • DNA Extraction
  • Biochemical Analysis
  • Recombinant protein expression
  • Protein purification
  • Assay Development
  • Western blotting
  • Organic synthesis techniques
  • Column chromatography
  • Silica gel preparation
  • Recrystallization
  • NMR analysis
  • Sample preparation
  • Protein chromatography
  • FTIR analysis
  • Q-TOF spectrometry
  • Centrifuge operation
  • Dichroism analysis
  • Light scattering analysis

Affiliations

  • Association of Chemistry Graduate Students, Curriculum Committee student representative, 05/01/24, present
  • The National Organization for the Professional Advancement of Black Chemists and Chemical Engineers (NOBCChE) UTK student chapter, secretary, 01/01/24, 05/01/25
  • Association of Chemistry Graduate Students, student-faculty interaction representative, 08/01/23, 05/01/24
  • The National Organization for the Professional Advancement of Black Chemists and Chemical Engineers (NOBCChE), member, 11/01/22, present
  • American Chemical Society, member, 01/01/20, present

Key Technical Skills

Synthetic techniques for generating various organic compounds., Preparation of silica gel column for column chromatography., Preparation of Si-gel plug for purification., Recrystallization purification technique., NMR data analysis using Mnova software (Full spectrum work-up)., Sample preparation for quantitative and qualitative analysis., DNA Amplification via Polymerase Chain Reaction., DNA cloning techniques: Restriction cloning (double digestion and ligation), Gibson assembly, Golden Gate assembly., Plasmid DNA design using software such as J5 Diva and Benchling., Primer design using software such as Snapgene., Plasmid DNA isolation from bacterial cells via plasmid miniprep., Plasmid DNA sequence analysis using software such as Clustal Omega, NCBI BLAST, and Snapgene., Recombinant protein expression in bacteria (E. coli) and yeast (S. cerevisiae) and purification using Ni-NTA, anti-Flag tag resins, and Fast Protein Liquid Chromatography (FPLC) instrument., Enzymatic fluorescence assay development., Western blotting., NMR analysis., FTIR analysis., Fast protein liquid chromatography (FPLC) for protein purification., Q-TOF Mass spectrometry sample preparation, instrument setup, and data analysis., Benchtop and floor-standing centrifuge operation., Circular Dichroism analysis., Dynamic Light Scattering analysis.

Publications

  • West, A.R., Afolabi-Balogun, T.A., Martin, C.C., Cambron, L., Wakeel, M. A., Baccile, J. A., Bailey, C.B., Photoreactive pantetheinyl mimics reveal design limitations for crypto-acyl carrier proteins., ChemBioChem, in revision
  • West, A.R; Bailey, C.B., Crosstalk between primary and secondary metabolism: Interconnected fatty acid and polyketide biosynthesis in prokaryotes., Bioorg. Med. Chem Lett, 2023, 91, 129377
  • West, AK.; Kaylor, L.; Subir, M.; Rayat, S., Synthesis, photophysical and nonlinear optical properties of push-pull tetrazoles., RSC Advances, 2022, 12, 34, 22331 - 22341

Presentations

  • 2024 National Organization for the Professional Advancement of Black Chemists and Chemical Engineers (NOBCChE) 51st Annual Conference, Orlando, FL, 10/02/23, Investigating the promiscuity of diazirine-based photoreactive crosslinkers for protein-protein interactions, oral presentation
  • 2023 National Organization for the Professional Advancement of Black Chemists and Chemical Engineers (NOBCChE) 50th Annual Conference, New Orleans, LA, 09/13/23, Development of fluorescence assay for quantitative measurements of dimethylallyl pyrophosphate (DMAPP), poster
  • 2022 ACS National Meeting and Expo, San Diego, CA, 03/20/22, Investigation into the inactive acyltransferase (AT) domain in module 2 and module 4 of the gephyronic acid biosynthesis, poster
  • 2021 ACS National Meeting and Expo, Virtual, 04/12/21, Push-pull tetrazoles: Synthesis and investigation of their photophysical and non-linear optical properties, poster, video, live session
  • Indiana Science Communication Day, Indianapolis, IN, 03/02/20, Synthesis of push-pull tetrazoles and investigation of their spectroscopic properties, 3-minute talk

Research

  • Graduate Research, 10/01/18, present, Dr. Joshua Baccile, University of Tennessee, Knoxville, TN, Developed and optimized an enzymatic fluorescence assay for the quantification of dimethylallyl pyrophosphate (DMAPP)., Performed circular dichroism (CD) analysis on protein samples to assess protein stability and conformation., Performed dynamic light scattering (DLS) experiments on protein samples to assess the hydrodynamic radius and particle size distribution of the sample., Performed Western blotting analysis for the detection of larger molecular weight protein, DEBS1TE., Designed, optimized, and conducted chemoenzymatic reaction assays for photoreactive group loading onto carrier protein., Designed plasmids and primers for Gibson assembly, DNA cloning, and protein expression in yeast and bacteria., Design gblocks with various restriction sites and construct DNA plasmids for DNA cloning., Perform restriction cloning, DNA transformation, and DNA gel electrophoresis. Proficient in reaction optimization and data analysis., Perform E. coli electrocompetent cell preparation., Perform protein expression and purification techniques (manual purification of histidine-tagged recombinant proteins using Ni-NTA resin)., Operate preparative high-performance liquid chromatography (HPLC) for purifying organic compounds., Operate Q-TOF LC-MS for the analysis of small molecules and biomolecules (proteins)., Literature searching skills and computer skills (Excel, PowerPoint, EndNote, Zotero, Benchling, Clustal Omega, Ncbi BLAST, ChemDraw, Mnova, Adobe Illustrator).
  • Graduate Research, 12/01/20, 12/31/22, Dr. Constance Bailey, University of Tennessee, Knoxville, TN, Design DNA plasmid and primers for DNA amplification and cloning., Perform DNA amplification and cloning techniques, including PCR setup, transformation, colony PCR, troubleshooting reactions, and data analysis., Perform protein expression and purification techniques, including protein synthesis and equipment operation (Fast protein liquid chromatography)., Operate equipment such as direct analysis in real-time (DART) mass spectroscopy and nuclear magnetic resonance (NMR) spectroscopy to characterize synthesized diazirine-based compounds., Synthesized three diazirine-based photo-crosslinking probes to study protein interactions., Literature searching skills and computer skills (Excel, PowerPoint, Endnote, Sciwheel, Snapgene, ChemDraw, Mnova, J5 DIVA, Ncbi BLAST, Clustal Omega).
  • Graduate Research, 10/01/18, 07/31/20, Dr. Sundeep Rayat, Ball State University, Muncie, IN, Synthesized several tetrazole-based organic push-pull chromophores for use in materials chemistry., Performed DFT calculations on synthesized push-pull chromophores., Utilized NMR and Mass Spectroscopy to characterize the synthesized push-pull chromophores., Investigated the photophysical properties of synthesized tetrazole-based push-pull chromophores using ultraviolet and fluorescence spectroscopy instruments., Literature searching skills and computer skills (Excel, EndNote, DFT calculations).
  • Undergraduate Research, 05/01/15, 08/31/17, Dr. Zhihai Li, Ball State University, Muncie, IN, Performed imaging experiments on the Atomic Force Microscope and executed techniques such as mounting a tip, laser alignment, sample preparation, image analysis, and optimization on the BioAFM viewer software., Performed imaging experiments on the Scanning Tunneling Microscope (STM) and executed techniques such as making tip, tip mounting, sample preparation, and image analysis., Atomic Force Microscopy (AFM) imaging of RNA nanoparticles on mica and gold nanoparticles., Characterization of hexane thiol-protected gold Nanoparticles with AFM., Trained incoming research assistants on how to properly operate the Atomic Force Microscope, including tip mounting, laser alignment, equipment setup, and imaging.

Timeline

Graduate Research

University of Tennessee
12.2020 - 12.2022

Graduate Research

University of Tennessee
10.2018 - Current

Graduate Research

Ball State University
10.2018 - 07.2020

Undergraduate Research

Ball State University
05.2015 - 08.2017

Doctor of Philosophy - Organic Chemistry

University of Tennessee

Master of Science - Chemistry, concentration - Organic

Ball State University

Bachelor of Science - Chemistry, concentration- Biochemistry, Biology, concentration-Pre-Medical Preparation

Ball State University
Anna-Kay R. West