Summary
Overview
Work History
Education
Skills
Publications
Timeline
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J. Walker Gussler

San Mateo,CA

Summary

Experienced bioinformatics professional with a demonstrated commitment to contributing to the development of genomics-based precision oncology products for earlier diagnosis of cancer.

Overview

7
7
years of professional experience

Work History

Senior Bioinformatics Scientist

Natera
03.2023 - Current

Proactively managed many concurrent projects working with multiple stakeholders from diverse interdisciplinary teams. Expanded scope to include variant prioritization and selection from solid tumor samples.

  • Bioinformatics lead for feasibility, verification, validation, product health and maintenance utilizing an infrastructure-first approach.
  • Conducted many retrospective studies of large datasets to assist in corrective and preventative actions as well as in-silico confirmation studies.
  • Honed an articulate and approachable communication style to effectively convey complex scientific results to technical as well as lay audiences in a persuasive manner.

Bioinformatics Scientist

Natera
12.2020 - 03.2023

Quick to adapt, I utilized creative software solutions via novel analysis pipelines to generate automated reporting. Obtained extensive knowledge of liquid biopsy detection of circulating tumor DNA.

  • Participated in verification and validation projects for FDA/CLIA certification for product modifications.
  • Modified or created various resources for pipelines including alternative reference genomes, new sample types, novel QC strategies, and new types of control samples.

ORISE Fellow

Centers For Disease Control And Prevention, CDC
03.2017 - 12.2020

Empowered non-technical state public health labs to leverage NGS assays to stymie Hepatitis C infection networks by:

  • Led software development, testing, and manuscript preparation for hepatitis C outbreak source attribution models.
  • Optimized feature engineering and selection for recency of infection classifier.
  • Engineered data visualization tools including molecular network visualization and an application which displays real-time overdose predictions based on google trends data.

Education

Master of Science - Bioinformatics

Georgia Institute of Technology
Atlanta, GA
12.2016

Bachelor of Science - Mathematics

University of Georgia
Athens, GA
05.2014

Skills

  • Python Programming
  • MySQL
  • Machine Learning
  • Quality Control
  • Software Development
  • NGS Pipeline Development
  • Statistical Data Analysis
  • Genomic Data Analysis
  • Task Prioritization
  • R Programming
  • Cancer Genomics
  • Linux/bash

Publications

  • Gussler JW, et al. (2022). Primary case inference in viral outbreaks through analysis of intra-host variant population. BMC Bioinformatics, 23(1):62.
  • Campo DS, Gussler JW, et al. (2020). Accurate spatiotemporal mapping of drug overdose deaths by machine learning of drug-related web-searches. PLoS ONE, 15(12), e0243622.
  • Skums P, Zelikovsky A, Singh R, Gussler JW, et al. (2018). QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. Bioinformatics, 34(1), 163-170.

Timeline

Senior Bioinformatics Scientist

Natera
03.2023 - Current

Bioinformatics Scientist

Natera
12.2020 - 03.2023

ORISE Fellow

Centers For Disease Control And Prevention, CDC
03.2017 - 12.2020

Master of Science - Bioinformatics

Georgia Institute of Technology

Bachelor of Science - Mathematics

University of Georgia
J. Walker Gussler