Summary
Overview
Work History
Education
Skills
Certification
Patents & Publications
References
Timeline
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Praveen Kumar Pogula

Praveen Kumar Pogula

Hopkinton,MA

Summary

Experienced nucleic acid chemist (15+) with a strong background in siRNA, ASOs, mRNAs, RNA editing technology-related roles. Made proficient contributions in drug delivery systems development. Skilled in problem-solving and optimizing performance. Capable of managing multiple projects and collaborating effectively with teams. Committed to continuous learning and staying current with industry trends to contribute to organizational success.

Overview

23
23
years of professional experience
1
1
Certification

Work History

Associate Director

Korro Bio
Cambridge, MA
11.2021 - Current
  • Identify new strategies or technologies for pursuing novel targeting, novel oligo designs, oligo synthesis, and/or conjugation of guide RNA editing modalities, including ligand-mediated and LNP delivery.
  • Interact broadly and collaboratively with internal multidisciplinary teams (including target biology, data science, computational chemistry, structural biology, biochemistry, high throughput in vitro screening and in vivo teams), forging relationships and active collaborations.
  • Coordinated with multiple CROs, academic institutes, and other external consultants to successfully complete projects within established timelines and budgets.
  • Develop and implement strategies to increase oligo chemistry workflow effectiveness and efficiency.
  • Oversaw oligo process and technical issues related to production processes.
  • Analyzed data collected from various sources in order to identify trends or areas requiring further investigation or action.
  • Supervise and manage Korro's chemistry (include: drive innovation, oligo synthesis, delivery, analytical, formulation), providing vision, inspiration, and both short-term and long-term goals.
  • Organized team activities to build camaraderie and foster pleasant workplace culture.
  • Provided leadership, insight and mentoring to newly hired employees to supply knowledge of various company programs.
  • Mediated conflicts between employees and facilitated effective resolutions to disputes.
  • Assisted senior leadership team in developing long-term strategic plans for the organization.
  • Set priorities and ensure progression for the technology and pipeline projects.
  • Major contributor in filing an IND application for A1AT.

Senior Investigator

GeneLeap
Woburn, MA
03.2024 - 11.2024
  • Managed internal and external chemistry teams and CROs.
  • Developed chemically modified mRNA synthesis including novel 5’-cap nucleotide analogs, nucleoside triphosphates (NTPs) and modified polyA tails.
  • Developed innovative mRNA LNP formulations include numerous ionizable cationic lipids and investigated neutral to negatively charged helper lipids.

Senior Research Scientist

1Globe Health Institute LLC
Norwood, MA
12.2015 - 03.2021

siRNA platforms

  • Developed oligo drug delivery systems targeting multiple diseases, including hepatic, oncology, CNS, and lung.
  • Innovated biocompatible nucleoside, non-nucleoside linkers and ligand conjugates (carbohydrates, lipids, and antibody).
  • Major contributor in filing an IND application for SARS-CoV-2.

Lipid Nanoparticles

  • Designed novel, biodegradable, ionizable, and cationic lipids and biopolymers. Extensive experience in preparing active or passive targeting LNPs using microfluidic techniques or thin lipid films. Conducted physicochemical characterization of LNPs (size, ZP, and PDI), nucleic acid loading efficiency measurement (Ribo-green assay), and nucleic acid analysis via Bio-analyzer.

RNA Biology

  • Expertise in siRNA screening assays, including handling various animal cell lines and culturing primary mouse hepatocytes. Conducted transfection and transfection-free assays, RNA isolation, extraction, and quantification from cell cultures, RT-qPCR assays, and DNA plasmid expression in cell cultures. Proficient in luciferase assays (microplate reader), oligonucleotide nuclease stability, and degradation studies in human serum (PAGE).
  • Collaborated with biology teams for candidate potency and durability evaluation, PK, and GLP toxicology studies.

Chemistry Operations

  • Established an oligonucleotide laboratory from scratch for small (1 µmol) and medium productions (50 µmol). Expert in oligonucleotide process development using Mermade synthesizers (MM192, MM192x, MM12) and Dr. Oligo 42, with familiarity in OP100.
  • Developed post-processing methodologies for novel chemically modified oligonucleotides and ligand conjugates. Strong expertise in oligonucleotide purification technologies including RPC-IP, AE, SAX (UPLCs, prep & semi-prep HPLCs, Akta purifiers), and transferred purification technologies to non-GMP scales. Skilled in TFF, lyophilization, and characterizations using various mass spectrometry methods. Designed and developed specific solid supports, optimizing them to increase crude product yields and purity levels.
  • Proficient in impurity analysis in oligonucleotide substances and products, and developed novel nucleotide-based chemical modifications to enhance stability, potency, and targeted delivery for multiple indications.
  • Reviewed CMC documentation. Managed collaborations with academic scientists and consultants.
  • Developed oligonucleotide laboratory management tools for design, registry, inventory, and formulations.

Supervised team of internal and overseas chemistry teams. Managed collaboration with multidisciplinary teams, both internal and external.

Postdoctoral Research Associate

University of Minnesota
Minneapolis, MN
07.2010 - 12.2015
  • Designed and synthesized modified nucleoside prodrugs for HIV reverse transcriptase inhibitors (RTIs). Developed combination therapies, including antimetabolites.
  • Developed novel nucleotide analogs, lead candidates are highly effective against protozoan parasite (Giardia Lamblia) causing Giardiasis.
  • Developed an analytical process for CDD's proprietary nucleotide triphosphate prodrug (SP1015), showing high potency against small intestinal tumors and lung cancers.
  • Developed Gemcitabine prodrugs to improve PK properties.
  • Designed, synthesized, and conducted antibacterial screening studies on bicyclic beta-lactamase inhibitors.
  • Conducted NMR studies and investigated the mechanism for the cyanide antidote, Sulfanegen Sodium.

Postdoctoral Researcher

South Dakota State University
Brookings, SD
10.2008 - 07.2010
  • Designed, synthesized, and evaluated the biological efficacy of folate receptor-targeted delivery systems using “core-modified porphyrin-combretastatin (A-4) prodrugs” against FR-positive tumors. Photodynamic therapy-mediated site-specific drug release.
  • The prodrug system contains four components, including a photosensitizer, a light cleavable linker, a cytotoxic payload, and folic acid.
  • Conducted drug release kinetics studies by NMR.

Synthetic Chemist

Suven Pharmaceuticals
Hyderabad, Telangana, India
08.2001 - 07.2002
  • Synthesized pharmaceutically active ingredients and drug intermediates including lipid derivatives and short peptides.

Education

Ph.D. - Medicinal Chemistry

Indian Institute of Chemical Technology (IICT)
Hyderabad
09-2008

Master of Science - Organic Chemistry

Kakatiya University
Warangal, India
06-2001

Bachelor of Science - Biology, Chemistry

Kakatiya University
Warangal, India
06-1999

Skills

  • Drug Discovery & Development
  • Nucleic Acid Chemistry
  • Delivery Chemistry
  • Process Chemistry
  • Strategic leadership
  • Program Development
  • Process Improvement
  • Project Management
  • Data Collection
  • Onboarding and training
  • Critical Thinking
  • Teams Management
  • Team Collaboration and Leadership
  • Work Planning and Prioritization
  • Decision-Making
  • Budget Management
  • Database Management
  • Proposal Writing
  • Resources Allocation
  • Technical implementation
  • Key relationship management
  • Verbal and Written Communication
  • MS Office

Certification

  • Diploma in Pharmacy (1995)

Patents & Publications

1.  Filed three provisional patent applications including novel sugar composition of guide RNA, novel nucleobases guide RNA compositions, and novel carbohydrate ligand composition of guide RNAs, KorroBio, 2023.

2.  Chiang J Li, Chen Cao, Li Gui, Praveen Kumar Pogula, Xiangao Sun, Danialle Rand “Novel composition for conjugating oligonucleotides and carbohydrates” WO2024040531A1

3.  Ekambar Kandimalla, Jun Jiang, Praveen Kumar Pogula, Laxmi Bhagat, Sheng Bi, Xin Xu and Pengfei Li “Modified mRNA 5'-cap analogs” US20230250127A1

4.  Chiang Li, Praveen Kumar Pogula, Danielle Rand “Novel compositions for conjugating oligonucleotides and lipids” filed provision US patent 2022, December.

5.  Praveen Kumar Pogula, Sreekanth Kokkonda, B. N. Sheshadri, Ahmed Kamal “Novel benzimidazole linked pyrrolo[2,1-c[1,4] benzodiazepine hybrids as potential antitumour agents and process for the Preparation Thereof” Granted patent US 8,835,421 B2, 2014.

6.  Sreekanth Kokkonda, Praveen Kumar Pogula, G. Balakishan, Ahmed Kamal “Novel pyrrolo[2,1-c][1.4]benzodiazepine derivatives with dithiocarbamate side chains and process for the preparation thereof and use as anticancer agents” Granted patent US 8,592.407 B2 2013.

7.  Praveen Kumar Pogula, Ahmed Kamal “Napthalimide-benzimidazole hybrids as potential antitumor agents and process for the preparation thereof” Granted patent US8288387 B2, 2012.

8.  Sreekanth Kokkonda, Praveen Kumar Pogula, Balakishan, Ahmed Kamal “Novel phenanthrylphenol linked pyrrolo[2,1-c][1,4]benzodiazepine hybrids as potential antitumour agents and process for the preparation thereof” Granted patent US8217167 B2, 2012.

9.  O. Srinivas, P. Ramulu, G. Ramesh, Praveen Kumar Pogula, Ahmed Kamal “C8-linked pyrrolo[2,1 c][1,4]benzodiazepine-acridone/acridine hybrids” Granted patent US7056913 B2, 2006.

10.  Praveen Kumar Pogula, Atasi Chatterjee, Miguel Chi, Siddhartha Das, and Steven E. Patterson S. E. Patterson “Triazoxins: A novel class of nucleoside with anti-Giardia activity” Bioorganic & Medicinal Chemistry Letters 2020, 30, 127175.

11.  Praveen Kumar Pogula, M. N. A. Khan, B. N. Sheshadri, O. Srinivas, Ahmed Kamal “Hybrid pharmacophore design and synthesis of napthalimide–benzimidazole conjugates as potential anticancer agents” Letters in Drug Discovery & Development, Volume 12, Number 5, 2015, pp. 374-384.

12.  Kristal Jackson, Praveen Kumar Pogula, S. E. Patterson “Design and synthesis of novel 1,2,4-triazole based polyoxin analogs” Heterocyclic Communications, 2013, 19, 375–386.

13.  Praveen Kumar Pogula, M. N. A. Khan, Sreekanth, Ahmed Kamal “Synthesis, DNA binding ability and anticancer activity of 2-heteroaryl substituted benzimidazoles linked pyrrolobenzodiazepine conjugates” Medicinal Chemistry 2013, 9, 651-659.

14.  Praveen K. Pogula, Youngjae You “Synthesis and singlet oxygen reactivity of 1,2-diaryloxyethenes and selected sulfur and nitrogen analogs” Photochemistry & Photobiology 2012, 88, 753-759.

15.  Kokkonda Sreekanth, P. Praveen Kumar, G. Balakishan, M. Janaki Ramaiah, SNCVL. Pushpavalli, Paramita Ray, Ahmed Kamal “Synthesis and potential cytotoxic activity of new phenanthrylphenol pyrrolobenzodiazepines” European Journal of Medicinal Chemistry 2010, 45, 2173-2181.

16.  Michael Rettig, Markus Weingarth, Praveen Kumar Pogula and Ahmed KamalSolution structure of a covalently bound pyrrolo[2,1-c][1,4]benzodiazepine-benzimidazole hybrid to a 10mer DNA duplex” Biochemistry 2009, 48, 12223-12232.

17.  Praveen Kumar Pogula, K. Sreekanth, B. N. Seshadri, P. Ramulu, Ahmed Kamal “Synthesis of new benzimidazole linked pyrrolo[2,1-c][1,4]benzodiazepine conjugates with efficient DNA-binding affinity and potent cytotoxicity” Bioorganic & Medicinal Chemistry Letters 2008,18, 2594-2598.

18.  P. Praveen Kumar, O. Srinivas, B. N. Seshadri, M. Shiva Kumar and Ahmed Kamal “Synthesis and DNA binding affinity of novel phosphonate-linked pyrrolo[2,1-c][1,4]benzodiazepine conjugates as anticancer agents” Bioorganic & Medicinal Chemistry 2008, 16, 3895-3906.

19.  O. Srinivas, P. Ramulu, G. Ramesh, Praveen Kumar Pogula, Ahmed Kamal “Synthesis and anticancer activity novel A-C8/C-C2-exo unsaturated alkoxyamido-linked pyrrolobenzodiazepine dimmer” Bioorganic & Medicinal Chemistry 2004, 12, 4337.

20.  O. Srinivas, P. Ramulu, G. Ramesh, Praveen Kumar Pogula, Ahmed KamalSynthesis of C8-linked pyrrolobenzodiazepine-acridone hybrids as potential DNA-binding agents” Bioorganic & Medicinal Chemistry Letters 2004, 14, 4107.

21.  P. Ramulu, O. Srinivas, G. Ramesh, Praveen Kumar Pogula, Ahmed Kamal “Synthesis of C8-linked pyrrolobenzodiazepine-benzimidazole conjugates with remarkable DNA binding affinity” Bioorganic & Medicinal Chemistry Letters 2004, 14, 4791.

22.  O. Srinivas, P. Ramulu, Praveen Kumar Pogula, Ahmed KamalSynthesis of novel C2 and C2-C8 linked pyrrolbenzodiazepine-naphthalimide hybrids as DNA-binding agents” Bioorganic & Medicinal Chemistry Letters 2003, 13, 3577.

References

References available upon request.

Timeline

Senior Investigator

GeneLeap
03.2024 - 11.2024

Associate Director

Korro Bio
11.2021 - Current

Senior Research Scientist

1Globe Health Institute LLC
12.2015 - 03.2021

Postdoctoral Research Associate

University of Minnesota
07.2010 - 12.2015

Postdoctoral Researcher

South Dakota State University
10.2008 - 07.2010

Synthetic Chemist

Suven Pharmaceuticals
08.2001 - 07.2002

Ph.D. - Medicinal Chemistry

Indian Institute of Chemical Technology (IICT)

Master of Science - Organic Chemistry

Kakatiya University

Bachelor of Science - Biology, Chemistry

Kakatiya University
Praveen Kumar Pogula