Summary
Overview
Work History
Education
Skills
Accomplishments
Publications
Languages
Certification
Websites
Timeline
Generic
Sanket Rane

Sanket Rane

New York,NY

Summary

Mathematical modeler with over a decade of experience leading research focused on decoding the complexity and dynamism in biological systems. Strong problem-solver with excellent communication, multitasking, and organizational abilities required for cultivating and maintaining research collaborations. Seasoned professional proficient in developing interdisciplinary approaches to understand immune dynamics in cancer, healthy aging, and infectious diseases.

Overview

7
7
years of professional experience
1
1
Certification

Work History

Associate Research Scientist

Columbia University
New York, NY
09.2020 - Current
  • Developed mechanistic and probabilistic mathematical models to pinpoint and quantify processes governing T and B cell ontogeny, homeostasis, and immune-response dynamics.
  • Employed phylogenetic and machine learning-based approaches to map the differentiation trajectories of antigen-specific B cells during immune responses.
  • Demonstrated leadership by initiating collaborations with experimental groups in the UK and Europe and spearheading the planning, writing, and submission of three R01 grants to the NIH.
  • Guided graduate and undergraduate students in developing computational models of biological systems.
  • Gave seminars and lectures in the mathematics, statistics, and biomedical engineering departments of Columbia University.

Postdoctoral Research Scientist

Columbia University Medical Center
New York, NY
09.2017 - 08.2020
  • Developed a comprehensive statistical framework for validating and ranking ODE and PDE models of lymphocyte ecology.
  • Built and used computational techniques for efficient analysis of large data sets and complex models, such as message-parsing-interfaces (MPI) and thread-building-blocks for parallelization.
  • Assisted in building and optimizing a high-performance computing cluster at Yates Lab.

Postdoctoral Research Fellow

University of Glasgow
Glasgow, UK
04.2016 - 08.2017
  • Synthesized integrative approaches that combined mathematical modeling with dedicated long-term experiments in mice to decipher mechanisms regulating T and B cell niche sizes and clonal diversity.

Education

Ph.D. - Immunology

National Institute of Immunology
India
12.2015

Skills

  • Probabilistic modeling, such as Doob-Gillespie solvers, agent-based models, and tau-leaping algorithms
  • Dynamical systems modeling using high-dimensional PDE and ODE systems
  • Bayesian statistical approach and cross-validation procedures for model selection
  • Random Forest and Markov Chain Monte Carlo based parameter estimation
  • Biochemistry and molecular biology techniques include flow cytometry, microscopy, cell culture and antibody-based assays, and PCR

Accomplishments

  • Under the European Union-funded Mathematics for Health and Disease program, research exchange fellowships were awarded to study at Utrecht University (Netherlands) and the University of Vigo (Spain).
  • The Council of Scientific and Industrial Research of the Government of India awarded me a research fellowship to support my doctoral studies for five years.

Publications

  • Babushku T, Lechner M, Yates A, Rane S*, Zimber-Strobl U, Strobl LJ Notch2 signaling guides B cells away from germinal centers towards marginal zone B cell and plasma cell differentiation. Under revision in Nature Communications. https://www.biorxiv.org/content/10.1101/2022.06.13.495961
  • Rane S, Hogan T, Lee E, Seddon B, Yates AJ (2022) Towards a unified model of naive T cell dynamics across the lifespan, eLife 11:e78168, June 2022. https://doi.org/10.7554/eLife.78168
  • Seddon B, Rane S*, and Yates A: Modeling Naive T Cell Homeostasis In: Molina- París C., Lythe G. (eds) Mathematical, Computational and Experimental T Cell Immunology. Springer 2021, Cham. https://doi.org/10.1007/978-3-030-57204-4_3.
  • Verheijen M#, Rane S#, Pearson C, Yates A, Seddon B. Fate mapping quantifies the dynamics of B cell development and activation throughout life. Cell Rep. 2020. https:// doi.org/10.1016/j.celrep.2020.108376
  • Mold JE, Réu P, Olin A, Bernard S, Michalsson J, Rane S*, Yates A, Khosravi A, Salehpour M, Possnert G, Brodin P, Frisén J. Cell generation dynamics underlying naive T-cell homeostasis in adult humans. PLoS Biol. 2019 Oct 29;17(10):e3000383. https://doi.org/10.1371/ journal.pbio.3000383
  • Hayes A, Rane S, Scales H, Meehan G, Benson R, Maroof A, Schroeder J, Tomura M, Gozzard N, Yates A, Garside P, Brewer J. Spatiotemporal Modeling of the Key Migratory Events During the Initiation of Adaptive Immunity Front Immunol. 2019; https://doi.org/10.3389/ fimmu.2019.00598
  • Balyan R, Gund R, Chawla AS, Khare SP, Pradhan SJ, Rane S*, Galande S, Durdik JM, George A, Bal V, Rath S. Correlation of cell-surface CD8 levels with function, phenotype, and transcriptome of naive CD8 T cells Immunology. 2019 https://doi.org/10.1111/imm.13036
  • Rane S, Hogan T., Seddon B., and Yates A. Age is not just a number. Naive T cells increase their ability to persist in the circulation over time. PLoS Biol. 2018. https://doi.org/10.1371/journal.pbio.2003949
  • Rane S#, Das R#, Ranganathan V, Prabhu S, Das A, Mattoo H, Durdik JM, George A, Rath S, Bal V. Peripheral residence of naïve CD4 T cells induces MHC class II-de- pendent alterations in phenotype and function. BMC Biol. 2014 Dec 21;12:106. doi:10.1186/s12915-014-0106-0.
  • Salam N, Rane S, Das R, Faulkner M, Gund R, Kandpal U, Lewis V, Mattoo H, Prabhu S, Ranganathan V, Durdik J, George A, Rath S and Bal V. T cell ageing: effects of age on development, survival & function. The Indian J of Med Res. 2013

#Joint first author. *Senior Author 

Languages

C++
Full Professional
R
Full Professional
Stan
Full Professional
Python
Professional
HTML and CSS
Professional

Certification

  • Machine learning scientist career track on DataCamp
  • Advanced Use of Stan, RStan, and Torsten for Pharmacometric Applications: Workshop by the Metrum Research Group in Budapest
  • Methods in Biostatistics: A Five-Week Workshop at the University of Vigo, Spain

Timeline

Associate Research Scientist

Columbia University
09.2020 - Current

Postdoctoral Research Scientist

Columbia University Medical Center
09.2017 - 08.2020

Postdoctoral Research Fellow

University of Glasgow
04.2016 - 08.2017

Ph.D. - Immunology

National Institute of Immunology
Sanket Rane