EPI2ME, QIIME 2™,q2Galaxy, GraphPad: Prism,Phamerator, HHpred,Phyre and Phyre2, AlphaFold
SREEMOYE NATH
Bioinformatics Scientist II
Denton,TX
Summary
Bioinformatics Scientist with a strong background in computational biology, molecular biology, and data analysis, adapted at analyzing complex biological data using advanced computational methods. Skilled in algorithm development, data mining, and programming languages such as Python and R. Passionate about harnessing cutting-edge technologies and methodologies to drive innovation and address pressing challenges in the life sciences field.
Overview
7
7
years of professional experience
9
9
years of post-secondary education
Work History
Bioinformatics Scientist
University of North Texas
01.2020 - Current
- Specialized in scalable, accessible, and reproducible metagenomics analysis using Illumina and Oxford Nanopore sequencing
- Developed research grant for novel line of bioinformatics research
- Developed customized pipeline to analyze and annotated novel bacteriophage genome post Illumina sequencing
- Implemented specialized software QIIME 2, Geneious Prime to analyze and solve NGS related scientific question
- Assisted with development and implementation of new course materials to enhance learning experience for other scientist, graduate student and undergraduate student
- Cooperated and participated in team projects, demonstrating an ability to work collaboratively and effectively assisting various computing modalities.
- Develop new molecular docking algorithms and tested using Phyre and Phyre2,AlphaFold, chaimra UCLA
- Identified issues, analyzed information and provided solutions to problems
- Handled specimens and conducted tests according to established protocols, keeping efficient records on all experiments.
Lab Technician
Escambia County Water Quality Lab
08.2019 - 12.2019
- Prepared reports by collecting, analyzing and summarizing information
- Monitored machines during operation to detect sounds of malfunctioning or excessive vibration and adjusted machines or replaced tools to eliminate problems
- Applied chemistry and biology knowledge and Mass spectroscopy expertise to enhance applications
- Restocked laboratory work stations and sterilized surfaces to maintain readiness for any project requirement
- Efficiently organized and maintained equipment to keep laboratory productive and safe
- Operated industrial mixers to compound and blend chemicals
- Handled chemicals such as nitric acid, sulfuric acid, and hydrofluoric acid
- Created mobile and modular custom container structures for variety of applications including storage, offices and mobile labs.
Teaching Assistant
University of West Florida
- Organized classroom materials to help teachers prepare for daily instruction and activities
- Set up visual aids, equipment and classroom displays to support mentor teacher's lesson delivery
- Retained interest and maximized receptive learning by educating students using hands-on instructional techniques
- Took attendance, graded assignments and maintained student records to assist teachers with administrative tasks and maintain smooth daily operations
- Partnered with teacher to plan and implement lessons following school's curriculum, goals, objectives and philosophies
- Tutored struggling students individually and in small groups to reinforce learning concept.
Education
Master of Science Biology(Molecular Genetics), Bio-statistics, Statistics, Epidemiology of infectious diseases, Genetics, Molecular Biology, Graduate Research Assistant -
University of West Florida
Pensacola, FL 08.2017 - 05.2019
Bachelor Science - Biotechnology, Chemistry, Zoology
Bangalore University
06.2013 - 05.2016
Ph.D. - Biochemistry And Molecular Biology
University of North Texas
Denton, TX 2020.01 - Current
Skills
Computational biology, molecular biology, and data analysis
Accomplishments
- Mary Beth Baird Scholarship 2023
- BDI Summer Research Assistantship 2022
- ICCR Scholarship by Govt of India
- Board Scholarship by Dhaka Board Government Scholarship Junior and & senior By Govt. of Bangladesh
- Served as international secretary of World Organization of Student and Youth(WOSY) Bangalore to students of 73 different countries
- Worked as a senior executive member of Federation of International Student in Bangalore (FISA-B)
Publications
- Methods in Molecular Biology https://doi.org/10.1007/978-1-0716-2273-5_21
- Genome announcement https://doi.org/10.1128/mra.00751-22/
- Mycobacterium tuberculosis and its clever approaches to escape the deadly macrophage. DOI: 10.1007/s11274-023-03735-9
Software
Timeline
Ph.D. - Biochemistry And Molecular Biology
University of North Texas
2020.01 - Current
Bioinformatics Scientist
University of North Texas
01.2020 - Current
Lab Technician
Escambia County Water Quality Lab
08.2019 - 12.2019
Master of Science Biology(Molecular Genetics), Bio-statistics, Statistics, Epidemiology of infectious diseases, Genetics, Molecular Biology, Graduate Research Assistant -
University of West Florida
08.2017 - 05.2019
Bachelor Science - Biotechnology, Chemistry, Zoology
Bangalore University
06.2013 - 05.2016
Teaching Assistant
University of West Florida
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