Summary
Overview
Work History
Education
Skills
Timeline
Generic

Stuart Hagler

Portland,OR

Summary

Data Scientist with 14 years of experience working with structured and unstructured healthcare data at a research hospital. Expert in statistical and analytical techniques including machine learning. Highly organized, motivated, and diligent with a significant background in Biomedical Engineering and Bioinformatics.

Overview

23
23
years of professional experience

Work History

Senior Data Scientist

Oregon Health & Science University
Portland, OR
02.2018 - Current

* Developed and deployed end-to-end Natural Language Processing (NLP) pipeline for extraction of unstructured clinical built around rule-based NLP engine. Developed rule-based queries for projects investigating AML, Breast Cancer, and COVID-19.
* Developed and deployed software and metrics to measure drug targetability for cancer medications using publicly available structured drug and pathway data.
* Developed NLP pipeline for extracting unstructured clinical data built around an open-source Large Language Model (LLM) prompted through LMQL using a high performance computing cluster.
* Developed graph neural network (GNN) to generalize from structured drug-target interaction data in order to enable drug discovery.
* Familiar with electronic health records (EHR), protected health information (PHI) and HIPAA, and biomedical ontologies (ICD-O, LOINC, MeSH, SNOMED CT, etc.)
* Participated in institutional Data Standards and Data Curation Working Groups.
* Communication skills: wrote or contributed to published papers and internal documents, prepared and delivered presentations related to data science projects.

Postdoctoral Researcher

Northeastern University
Boston, MA
10.2014 - 08.2015

* Developed algorithms for remote monitoring of patient cognitive performance using simple computer games.
* Communication skills: wrote or contributed to published papers.

Graduate Student Researcher

Oregon Health & Science University
Portland, OR
10.2010 - 09.2014

* Developed algorithms for remote monitoring of patient cognitive performance using measurements of computer mouse movements.
* Developed algorithms for remote monitoring of patient cognitive performance using simple computer games.
* Communication skills: wrote or contributed to published papers and internal documents, prepared and delivered presentations related to data science projects.

Research Associate

Oregon Health & Science University
Portland, OR
02.2007 - 09.2010

* Developed algorithms for remote monitoring of patient cognitive performance using a variety of sensors placed in the home.
* Developed algorithms to measure patient motor performance using using a variety of sensors used within a laboratory setting.

Software Engineer

Applied Materials
Hillsboro, OR
07.2001 - 04.2005

Education

Ph.D. - Biomedical Engineering

Oregon Health & Science University
Portland, OR
09.2014

Master of Science - Physics

University of Washington
Seattle, WA
12.1999

Skills

General: Deep Learning, Large Language Models, Machine Learning, Natural Language Processing, Neural Networks, Prompt Engineering, Scientific Writing, Statistical Analysis

Software: C, Matlab, Python, PyTorch, Regular Expressions, Shell, SQL

Timeline

Senior Data Scientist

Oregon Health & Science University
02.2018 - Current

Postdoctoral Researcher

Northeastern University
10.2014 - 08.2015

Graduate Student Researcher

Oregon Health & Science University
10.2010 - 09.2014

Research Associate

Oregon Health & Science University
02.2007 - 09.2010

Software Engineer

Applied Materials
07.2001 - 04.2005

Ph.D. - Biomedical Engineering

Oregon Health & Science University

Master of Science - Physics

University of Washington
Stuart Hagler