Summary
Overview
Work History
Education
Skills
Languages
Skills and Methodology
Hobbies
Timeline
Generic

Sunjay Fernandes

Molecular And Computational Biologist
Dublin,California

Summary

Experienced molecular and computational biologist with an accomplished dual background in industry and academia. Worked in top tier industry and academic environments. Enthusiastic about integrating knowledge across fields and expertise that can lead to innovative solutions to old problems. Excellent reputation in collaboration and management. Passionate about art and design. Citizen of the European Union (Sweden) and India.

Overview

15
15
years of professional experience
12
12
years of post-secondary education

Work History

Senior Scientist

10x Genomics
10.2021 - Current
  • Evaluated novel technologies for potential integration into existing workflows, streamlining methodologies while maintaining scientific rigor.
  • Developed innovative solutions to complex scientific problems, enhancing the company''s intellectual property portfolio.
  • Participated in strategic planning efforts, helping to set both short-term and long-term goals for the organization.
  • Effectively communicated advances to Senior and C-suite management. Mentored junior scientists in scientific and practical approaches to method and assay development leading to product and career growth
  • Successfully launched the BEAM product to assess antigen specificity to TCR and BCR. Currently working on Next Generation Products for the Single Cell Portfolio.

Postdoctoral Research Fellow

Karolinska Institutet
03.2020 - 09.2021
  • Personalized Medicine: Designed a single cell methylome and chromatin binding multi-omic integrative approach for qualification of neuronal damage in the brain for the purpose of diagnosis, treatment efficacy and response, and risk stratification applicable to Multiple Sclerosis (MS) and a range of brain related disorders.
  • Data Deconvolution: Design of a panel for deconvolution of bulk methylation data from brain tissue.
  • Biomarker evaluation: Transcriptome and Methylation data integration from B cells in MS.

Consultant-Genomics

Sanofi-Synthelabo, India
11.2012 - 12.2012
  • Conceptualizing proposals for detection of novel diagnostic and therapeutic markers in cervical cancer using next generation sequencing.

Scientist-Collaborations and Manager-Lab

Genotypic Technology Pvt. Ltd.
07.2009 - 07.2012
  • Next Generation Sequencing: Set up of protocols, and instrumentation on 3 platforms (Illumina, SOLID and Ion Torrent) for 6 applications (RNA-Seq, ChIP-Seq, miRNA-Seq, Whole genome, On-array and liquid capture and Amplicon-Seq).
  • Trained and managed a team of 6 junior scientists.
  • Voted best employee of the year - 2010-2011.
  • Interfaced between the client, bioinformatics team, and sales team to design projects and set up and maintain collaborations across academia and industry.
  • Designed and tested a kit for mitochondrial sequencing (amplicon based) for diagnostics and lineage detection.

Education

Bachelor of Science - Biotechnology

St. Josephs College Of Arts And Science
Bangalore, India
06.2002 - 04.2005

Master of Science - Biotechnology

AMC, Bangalore University
Bangalore, India
06.2005 - 05.2007

Ph.D. - Computational And Molecular Neuroimmunology

Karolinska Institutet
Stockholm, Sweden
03.2013 - 02.2020

Skills

Data Science

Molecular biology

Cross Field Integration

Innovation

Assay development

Advanced Research Techniques

Research and publication

Languages

English
French
Hindi
Kannada
Konkani

Skills and Methodology

- Extensive experience in Next Generation Sequencing (Single cell and bulk transcriptomics, ATAC Seq, Methylation, ChIP-Seq and Microarrays) and instrumentation (Illumina HiSeq, GAIIx, Ion Torrent and Solid).

- Molecular Biology of Nucleic Acids (PCR, Primer design with standard and modified oligos, bisulphite sequencing, cloning, invitro transcription, microinjection of DNA and RNA, DNA/RNA extraction from a large variety of tissues from multiple species)

- Bioinformatics using R and Python being used to develop code and for use in a large variety of analysis for the above mentioned NGS applications.

- Cell culture of primary cells from blood and embryonic stem cells, cell sorting, and cell isolation

- Microbiological techniques such as preparation of competent cell, bacterial cell culture and transformation.

Hobbies

- Founder of Stockholm Art Collective, Stockholm, Sweden (2018-Present) and San Franscisco Art Collective, San Franscisco, USA (2022-Present)

- Founder of the Stockholm Wellness Collective (2019-Present)

- Youth Representative of the Catholic Club, Bangalore, India (2006-2007)

- Elected Class Representative to the student council in the first year of B.Sc. (2002-2003)

- Student Editor for Department of Biotechnology journal in the final year of B.Sc. and M.Sc. (2004-2005 & 2006-2007)

Timeline

Senior Scientist

10x Genomics
10.2021 - Current

Postdoctoral Research Fellow

Karolinska Institutet
03.2020 - 09.2021

Ph.D. - Computational And Molecular Neuroimmunology

Karolinska Institutet
03.2013 - 02.2020

Consultant-Genomics

Sanofi-Synthelabo, India
11.2012 - 12.2012

Scientist-Collaborations and Manager-Lab

Genotypic Technology Pvt. Ltd.
07.2009 - 07.2012

Master of Science - Biotechnology

AMC, Bangalore University
06.2005 - 05.2007

Bachelor of Science - Biotechnology

St. Josephs College Of Arts And Science
06.2002 - 04.2005
Sunjay FernandesMolecular And Computational Biologist