Summary
Overview
Work History
Education
Skills
Certification
Publications
Timeline
Generic

Vedanta Malhoe

Cape Coral,FL

Summary

ASCP Certified Molecular Technologist with 10 years of experience in molecular biology, biochemistry, and analytical chemistry within cGMP, R&D, and clinical diagnostics environments. Adept in bio-analytical and molecular method development, specializing in assay validation in full compliance with FDA and CAP/CLIA regulations. Demonstrated expertise in successfully onboarding Next-Generation sequencing panels and implementing molecular diagnostic methodologies. Proficient in efficiently troubleshooting and operating Illumina-based sequencing platforms, as well as a comprehensive suite of NGS panels from esteemed vendors including IDT, Invitae, Pillar, and NanoString. Extensive experience encompasses the utilization of solid tumor, heme, liquid biopsy panels, and NanoString's Prosigna Breast Cancer Prognostic Assay. Successfully led the implementation and validation of clinical LIS pipeline for new diagnostic testing. Acknowledged for exceptional teamwork, crossfunctional collaboration, and mentorship capabilities. Proven ability to assume leadership roles in cross-functional projects. Actively pursuing a Masters in Genomics from Johns Hopkins University, focusing on Healthcare Genomics and Bioinformatics, with a curriculum that deeply focuses on variant curation techniques aligning with ACMG guidelines for variant interpretation

Overview

12
12
years of professional experience
1
1
Certification

Work History

Clinical Molecular Technologist; NGS Lead

Florida Cancer Specialists and Research Institute
11.2020 - Current
  • Led validation and launch of Illumina's TruSight 500 Solid Tumor and Archer Myeloid and Pan-Heme NGS panels
  • Optimized procedures for company's first Next Generation Sequencing pipeline, including FFPE and bone marrow specimen extractions, DNA & RNA quantification methodologies, and sample preparation
  • Performed and streamlined Library prep
  • Procedures (both automated and manual)
  • Collaborated with vendors and third-party genomics consultants for validation reviews, method and instrument troubleshooting, and data presentation
  • Led development of SOFT LIS Molecular suite to facilitate in-house genomic testing
  • Developed CAP/CLIA documentation, including specimen handling/rejection forms, instrument verification records, and training records
  • Authored, reviewed, and edited clinical SOPs
  • Performed Prosigna Breast Cancer Prognostic Assay
  • Trained, mentored, and supervised new technologists on high complexity tests (NGS workflows) and supervised 6-month and annual competencies
  • Validation of Pillar Onco Reveal MPN panel (focusing on MPL, JAK2, and CALR variants)
  • Responsible for proforma publication and presentation for new testing including liquid biopsy and UGT1A1 variant detection
  • • Contributed to the validation and onboarding of the Quantidex qPCR-based BCR-ABL IS testing for CML detection and treatment monitoring

Selected Highlight: Led onboarding of first in-house genomic testing capabilities at Florida Cancer Specialist's Next Generation Sequencing (NGS) laboratory, enabling physicians at nearly 100 locations to make faster diagnoses of wide range of cancers.

Senior Analytical Chemistry Research Associate/QC

Algenol Biotech, LLC
01.2019 - 07.2020
  • Supported cosmetic/food natural product development from algae as Senior Analytical Chemist
  • Determined algae media nutrient content by flow injection analysis (FIAlab) to monitor dosing and nutrient uptake
  • Conducted QC analysis for product release, in-process, and shelf-life stability testing, following cGMP guidelines for method documentation and COA preparation
  • Authored QC instrument verification and product testing SOPs
  • Performed UPLC testing on final product to detect preservatives in cosmetic products
  • Conducted analytical equipment qualifications (IQ/PQ) for analytical balances, centrifuges, and UV-VIS spectrophotometer

Selected Highlight: Supported quality function of new product plant by generating timely COAs to ensure shipment.

Senior Biochemistry Research Associate

Algenol Biotech LLC
01.2018 - 01.2019
  • Managed the flow of high-volume biochemical samples to support product development R&D and process optimization for commercialization.
  • Developed and validated ELISA microcystin toxin screening method and a protein phosphatase confirmation assay for quality assurance testing of the final product.
  • Optimized a lysozyme extraction method for high-value pigment extraction from resistant biomass to support process development operations.
  • Served as a technical advisor on a multi-disciplinary team focusing on downstream process optimization of algae pigment, reviewed test plans, and participated in RCA sessions.
  • Characterized carbohydrate content in released polysaccharide as a potential cosmetic product in new algal strains.

Biochemistry Research Associate

Algenol Biofuels, LLC
03.2014 - 01.2018
  • Developed and validated high-throughput enzyme kinetics assays to monitor activity changes corresponding to protein levels, mutations in fermentation genes, or enzyme inactivation by post-transcriptional modifications
  • Trained and supervised incoming lab assistants to maximize department bandwidth for sample processing
  • Led the "Method Harmonization" project in collaboration with the company's European division and Reliance Industries, aiming to standardize enzyme assay test methods at both sites.

Molecular Biology Research Assistant

Algenol Biofuels, LLC
10.2011 - 03.2014
  • Supported research for Algenol's proprietary "Direct to Ethanol" process from hybrid, blue-green algae
  • Responsible for plating, media prep, PCR for molecular transformation, and small-scale cultivation of cyanobacterial proprietary strains
  • Developed and optimized Western blot methods to monitor protein levels in key fermentation pathways for ethanol production in new transformants.

Education

Master of Science - Individualized Genomics and Health, Genome Sciences/Genomics

The Johns Hopkins University
05.2025

Bachelors of Science - Biology, Chemistry

Florida Gulf Coast University
Estero, FL
2009

Skills

  • Molecular Biology: Next-generation sequencing library prep and sequencing, qPCR, PCR, cell culture/aseptic technique, genetic transformation, promoter search, primer-design, FFPE and heme DNA/RNA extractions, gel electrophoresis and Northern blot
  • Genomic Analysis and Interpretation : PierianDx Clinical Genomics Workspace Software (CGW), Integrated Genomics Viewer (IGV), ClinVar Database, GnomAD Database, Oncokborg, Cbioportalorg, Ckbjaxorg, Cancerhotspotsorg,
  • Protein Characterization Techniques: cell extract preparation, protein expression/column purification, SDS-PAGE, Native-PAGE, Western Blot, ELISA and protein quantification assays
  • High-throughput Biochemical Assay Development: enzyme kinetics assay development, carbohydrate analysis by anthrone-sulfuric acid method, algae pigment extraction and quantification by UV-Vis spectrophotometer and Microcystin toxin screening
  • Instrumentation & Analysis of Raw Material: NextSeqDx550 Illumina Sequencer, Agilent Tape station, Hamilton STAR liquid handler, QuantStudio3, QIACube, UV-VIS spectrophotometer, Fluorometer, CHNS elemental analyzer (Kjeldahl method), Flow-injection analyzer (FIAlab software), Waters Acquity UPLC, instrument calibration/performance verification Instrument care, maintenance and troubleshooting
  • Technical Writing Skills: authored varied documentation including clinical SOPs, CAP/CLIA QM documentation, QC standard operating procedures, Analytical test methods, experiment proposals, technical (method development/qualification) reports and cGMP documents
  • Software: Illumina Base Space Sequencing Hub, PierianDx bioinformatics pipeline, ArcherDx bioinformatics pipeline, Quantstudio3-, SoftMax Pro, Hamilton STAR software, SCC Genetics Information Systems Suite (LIS)

Certification

MB(ASCP)CM Molecular technologist license (License no TN 52511).

Publications

NCBI GenBank Submission: Van Horn, J.R., Malhoe, V.S., Thies, M., Delvina, M., Betano, L., Tolley, S.G. & Ueda, T. 2008. Cloning of complete peroxiredoxin gene from the intertidal crab Eurypanopeus depressus. (EdPrx-1 GenBank accession no. EU684547)


Comparative Biochemistry and Physiology, Part B, research publication:

Van Horn, J.R., Malhoe, V.S., Delvina, M., Thies, M., Tolley, S.G. & Ueda, T. Molecular cloning and expression of a 2-Cys peroxiredoxin gene in the crustacean Eurypanopeus depressus induced by acute hypo-osmotic stress. Comp 19961951. 2009

Timeline

Clinical Molecular Technologist; NGS Lead

Florida Cancer Specialists and Research Institute
11.2020 - Current

Senior Analytical Chemistry Research Associate/QC

Algenol Biotech, LLC
01.2019 - 07.2020

Senior Biochemistry Research Associate

Algenol Biotech LLC
01.2018 - 01.2019

Biochemistry Research Associate

Algenol Biofuels, LLC
03.2014 - 01.2018

Molecular Biology Research Assistant

Algenol Biofuels, LLC
10.2011 - 03.2014

Master of Science - Individualized Genomics and Health, Genome Sciences/Genomics

The Johns Hopkins University

Bachelors of Science - Biology, Chemistry

Florida Gulf Coast University
Vedanta Malhoe