Summary
Overview
Work History
Education
Skills
Websites
Awards and Honors
Languages
Publication
Timeline
Generic

Irfana Saleem

Houston,TX

Summary

Enthusiastic and driven RNA biologist with experience in RNA structure, RNA-protein interactions, and post-transcriptional gene regulation. My expertise spans next-generation sequencing (NGS), molecular biology, and biochemistry, with a strong publication record. Highly organized, initiative-taking, and collaborative, I thrive in multidisciplinary research environments and am eager to contribute to innovative discoveries in RNA biology.

Overview

12
12
years of professional experience

Work History

Research Associate

Baylor College of Medicine
06.2024 - Current
  • Investigating gene regulation and signal transduction pathways using molecular assays and data analysis

Research Associate

Baylor College of Medicine
01.2023 - 06.2024

• Developed high-throughput chemical probing strategies for simultaneous mapping of RNA secondary, tertiary, and quaternary structures in living cells.
• Investigated RNA-protein interactions using , and mutational profiling approaches.
• Characterized the role of 7SK RNA structural dynamics in transcriptional regulation.
• Conducted mutation signature filtering for high-fidelity RNA structure probing.

Postdoctoral Researcher

Baylor College of Medicine
03.2021 - 12.2022

• Led studies integrating DMS probing, RNA structure modeling, and mutational analysis to dissect RNA structural ensembles and their regulatory functions.

Ph.D. Research

University of Nebraska Medical Center
01.2015 - 01.2020
  • Investigated the role of Ecdysoneless (ECD) in mRNA processing and oncogenesis
  • Developed expertise in RNA-protein interactions, RNA splicing, and bioinformatics analysis

Master’s Research

Indian Institute of Science Education and Research
01.2014 - 01.2015
  • Identified SNAREs interacting with the mammalian HOPS complex for late endosome-lysosome fusion
  • Gained expertise in confocal microscopy and molecular biology techniques

Summer Research Internship

Rajiv Gandhi Centre for Biotechnology
01.2013 - 12.2013
  • Conducted molecular biology experiments related to cancer biology

Education

Ph.D. - Biochemistry And Molecular Biology

University of Nebraska Medical Center
Omaha, NE
12-2020

Master of Science - Life Sciences

Indian Institute of Science Education And Research
Mohali
05-2015

Skills

  • RNA Structure & Dynamics: DMS/SHAPE probing, mutational profiling, RNA secondary & tertiary structure modeling
  • High-throughput Techniques: NGS library preparation, mutational signature analysis
  • Molecular Biology: RT-qPCR, CRISPR, cloning, RNA immunoprecipitation
  • Computational Analysis: RNA structure prediction, Python, Orange, RNA ensembles
  • Microscopy: Confocal microscopy, live-cell imaging
  • Data Analysis & Software: GraphPad Prism, ImageJ, MS Office
  • Research and analysis
  • Documentation skills

Awards and Honors

  • NCI Scholarship Recipient, Keystone Protein-RNA Interactions, Canada (2023) – Oral & Poster Presentation
  • Outstanding Poster Presentation, Dept. of Biochemistry, UNMC (2018)
  • RNA Society PhD Fellowship Winner, Bermuda Principles: Impact on Splicing (2018) – Oral Presentation
  • Graduate Research Fellowship, UNMC (2017-2019)
  • INSPIRE Fellowship, Ministry of Human Resource Development, India (2010-2015)
  • Award of Excellence, IISER Mohali (2013-2014)

Languages

Hindi
Full Professional
Malayalam
Native or Bilingual

Publication


  • Mohsin Raza, Asher Rajkumar Rajan, Achyuth Kalluchi, Irfana Saleem, Benjamin B. Kennedy, Kishor K. Bhakat, Hamid Band, M. Jordan Rowley, Vimla Band. ECD functions as a novel RNA-binding protein to regulate mRNA splicing. (Submitted to NAR)
  • Irfana Saleem, Thomas Miller, Lucas Kearns, David Mitchell, Ritwika Bose, Chase Weidman, Anthony Mustoe. Simultaneous mapping of RNA secondary, tertiary, and quaternary structure in living cells by multi-site DMS probing. (Co-first author, under review in Molecular Cell)
  • Ritwika Bose, Irfana Saleem, Anthony Mustoe. Causes, functions, and therapeutic possibilities of RNA secondary structure ensembles and alternative states. Cell Chem Biol, Jan 18, 2024. (Co-first author, review article)
  • Mitchell III, David, Jennifer Cotter, Irfana Saleem, and Anthony M. Mustoe. Mutation signature filtering enables high-fidelity RNA structure probing at all four nucleobases with DMS. Nucleic Acids Research, 2023.
  • Bhopal C. Mohapatra, Sameer Mirza, Aditya Bele, C. B. Gurumurthy, Irfana Saleem, et al. Ecdysoneless overexpression in breast cancer is an independent prognostic marker, regulating Myc and Wnt signaling pathways. Molecular Cancer Research, 2022.
  • Samuel W. Olson, Anne-Marie W. Turner, J. Winston Arney, Irfana Saleem, et al. Large-scale allosteric switch in the 7SK RNA regulates transcription in response to growth and stress. Molecular Cell, 2022.
  • Mirza, S., A. Kalluchi, M. Raza, Irfana Saleem, et al. Ecdysoneless Protein Regulates Viral and Cellular mRNA Splicing to Promote Cervical Oncogenesis. Molecular Cancer Research, 2021.
  • Irfana Saleem, S. Mirza, A. Sarkar, M. Raza, et al. The Mammalian Ecdysoneless Protein Interacts with RNA Helicase DDX39A To Regulate Nuclear mRNA Export. Molecular and Cellular Biology, 2021.
  • Appolinaire A. Olou, Aniruddha Sarkar, Irfana Saleem, et al. Mammalian ECD Protein Is a Novel Negative Regulator of the PERK Arm of the Unfolded Protein Response. Molecular and Cellular Biology, 2017.

Timeline

Research Associate

Baylor College of Medicine
06.2024 - Current

Research Associate

Baylor College of Medicine
01.2023 - 06.2024

Postdoctoral Researcher

Baylor College of Medicine
03.2021 - 12.2022

Ph.D. Research

University of Nebraska Medical Center
01.2015 - 01.2020

Master’s Research

Indian Institute of Science Education and Research
01.2014 - 01.2015

Summer Research Internship

Rajiv Gandhi Centre for Biotechnology
01.2013 - 12.2013

Ph.D. - Biochemistry And Molecular Biology

University of Nebraska Medical Center

Master of Science - Life Sciences

Indian Institute of Science Education And Research
Irfana Saleem