Jared Hendrickson
Bioinformatician
Summary
Constantly learning, constantly refining biotech employee from startup to non-profit looking for a different type of opportunity
Overview
7
7
years of professional experience
3
3
years of post-secondary education
Work History
Bioinformatics Engineer
Sage Bionetworks
05.2022 - 04.2024
- Completed RNA-seq pipeline in Nextflow, along with differential expression analysis to support MODEL-AD initiative of transgenic mouse models to better represent Alzheimer's Disease in humans with custom reference genome design to account for CRISPR/Cas9 editing. Rescued four R shiny apps from server crash before my arrival, including later maintenance and development of another R shiny app to pull from API for non-developers (followed agile like development with formal testing such as testthat R package)
Principal Research Associate, Bioinformatician
Vedanta Biosciences
03.2022 - 04.2022
- Performed various analyses in R to assess quality aspects of custom barcodes from customized Nextflow Nanoseq pipeline that I created
Senior Research Associate, Bioinformatician
Vedanta Biosciences
03.2019 - 03.2022
- Under guidance of statistical biophysicist to implement linear mixed modeling and other statistical approaches, heavily employing R markdown
Contract Research Associate, Bioinformatician
Vedanta Biosciences
06.2018 - 02.2019
- Developed R Shiny app to connect to company curated microbial culture collection SQL database for internal queries by non-programming scientists and to showcase to investors
Co-op for Drug Discovery
Translate Bio
01.2018 - 06.2018
- Implemented machine learning approach in Python to classify microscope slide sub-images as retina and not retina using convolutional neural networks
Biomedical Informatics Research Intern
Vanderbilt University Medical Center
06.2017 - 08.2017
- Analyzed 3,165 homelessness cases along with matched controls through PheWAS framework in R from electronic health records
Education
Master of Science - Bioinformatics
Northeastern University
Boston, MA 09.2016 - 08.2018
Master of Professional Studies - Mycology Certificate (Evenings, in Progress 2025)
The Evergreen State College
Olympia, WA 09.2024 - 12.2025
Skills
R (Tidyverse, Shiny, R Markdown, Devtools, testthat)
Python for Biology, Biopython
Machine Learning (Random Forest, Deep Learning)
Biostatistics
Cloud Computing: AWS EC2, familiarity with AWS Batch
Nextflow, Snakemake, Shell
Docker, Singularity familiarity
Oxford Nanopore, Illumina, Pacbio sequencing
Git (Github, Gitlab), Codespaces, VS code
Timeline
Master of Professional Studies - Mycology Certificate (Evenings, in Progress 2025)
The Evergreen State College
09.2024 - 12.2025
Bioinformatics Engineer
Sage Bionetworks
05.2022 - 04.2024
Principal Research Associate, Bioinformatician
Vedanta Biosciences
03.2022 - 04.2022
Senior Research Associate, Bioinformatician
Vedanta Biosciences
03.2019 - 03.2022
Contract Research Associate, Bioinformatician
Vedanta Biosciences
06.2018 - 02.2019
Co-op for Drug Discovery
Translate Bio
01.2018 - 06.2018
Biomedical Informatics Research Intern
Vanderbilt University Medical Center
06.2017 - 08.2017
Master of Science - Bioinformatics
Northeastern University
09.2016 - 08.2018
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