Summary
Overview
Work History
Education
Skills
Honors And Awards
Publications
Mentoring Experience
Websites
References
Timeline
Generic

Patrick Houlihan

Ashburn

Summary

The final frontier of ion channel discovery is organellar membranes. As an electrophysiology specialist and skilled cell biologist, I am uniquely adept at unraveling the mysteries of intracellular physiology and cell metabolism.

Overview

20
20
years of professional experience

Work History

Research Scientist

Janelia Research Campus
Ashburn
07.2017 - Current
  • Characterized the pharmacological sensitivities of the Acid Sensitive Outwardly Rectifying anion current, ASOR, elucidating potential physiological role.
  • Characterized and corrected misreported pathophysiological function of SARS-CoV-2 Orf3A gene product.
  • Determined genetic identity of Inner Mitochondrial Anion current, IMAC, exploring mitochondrial metabolic function.
  • Discovered and characterized three novel anion currents across inner mitochondrial membrane.

Postdoctoral Research Associate

Boston Children’s Hospital
Boston
08.2013 - 07.2017
  • Characterized TRPM4 mutation in pediatric patient with cardiac arrhythmia.
  • Investigated Volume Regulated Anion Current in LRRC8a knockout and truncation mutant mouse models.
  • Characterized Mitochondrial Calcium current, MiCa, in cardiomyocytes from congestive heart failure mouse model.

Graduate Research Assistant

The University of Iowa College of Medicine
Iowa City
08.2006 - 08.2013
  • Investigated mitochondrial fission and fusion effects on calcium storage in peripheral neurons.
  • Characterized neuroprotective properties of Drp1 phosphoregulation through genetic manipulation and pharmacological intervention during glutamate toxicity.
  • Analyzed mitochondrial architecture and calcium dynamics in diabetic neuropathy mouse model.
  • Examined TRPM8-dependent cytosolic calcium oscillations in peripheral neurons via electrofluorimetry.
  • Characterized MCUb function in mitochondrial calcium buffering using functional imaging and genetic techniques.

Undergraduate Research Assistant

University of Nevada Las Vegas
Las Vegas
08.2005 - 05.2006

Analytical chemistry

  • Fourier Transform IR spectroscopy (FT-IT)
  • Cyclic voltametry

Education

PhD - Pharmacology

The University of Iowa College of Medicine
Iowa City
05-2013

BS - Biochemistry

University of Nevada Las Vegas
Las Vegas, Nevada
05-2006

Skills

Patch-clamp electrophysiology:

  • Proteoliposomes
  • Organellar membranes (mitochondria and peroxisomes)
  • Primary cells (peripheral and central neurons, B cells, macrophages, cardiomyocytes)
  • Immortalized cell lines
  • Electro-fluorometry
  • Patch-loading techniques

Imaging & Functional Assays

  • calcium (cytosolic and organelle lumenal)
  • membrane potential
  • Oxidative stress (ROS)
  • protein dynamics
  • organelle dynamics
  • Widefield, Confocal and high-resolution microscopy
  • Metabolic assays (Seahorse) with primary cells, immortalized cell lines and zebrafish embryos

Cell & Molecular Biology

  • Quantitative PCR (RT-qPCR)
  • Stable, inducible cell line generation
  • Gene cloning
  • Tissue-specific cDNA library preparation
  • CRISPR editing, CRISPRi and CRISPRa
  • Western blot, immunoprecipitation (IP), and Co-IP

Cell Culture

  • Primary culture of neurons (hippocampal, DRG, DRG–spinal cord co-culture), cardiomyocytes, B cells, and macrophages
  • Maintenance of immortalized cell lines

Animal Models

  • Mouse and rat husbandry and genotyping
  • Disease models: congestive heart failure and diabetes
  • Echocardiography

Honors And Awards

  • Trainee, Postdoctoral Training in Research Methods in Pediatric Heart Disease, 07/01/14, 06/30/16
  • Trainee, Postdoctoral Training in Developmental Neurology, 07/01/12, 06/30/14
  • American Heart Association Predoctoral Fellowship, 07/01/10, 06/30/11
  • Trainee, Predoctoral Training in Pharmacological Sciences, 07/01/07, 06/30/09
  • ACS Graduating Senior in Chemistry, 2006
  • ACS Analytical Undergraduate Chemist of the Year, 2005

Publications

  • The Inner Mitochondrial Anion Current is Mediated by ABCB7 to Coordinate Iron Metabolism and Complex II Function. Houlihan, P.R., Benedetti, L., Miller, A.N., Ludlow, A.V., Lippincott-Schwartz, J., and Clapham, D.E., Currently in revision, 2025
  • Periodic ER-plasma membrane junctions support long-range Ca2+ signal integration in dendrites. Benedetti, L., Fan, R., Weigel, A.V., Moore, A.S., Houlihan, P.R., Kittisopikul, M., Park, G., Petruncio, A., Hubbard, P.M., Pang, S., Xu, C.S., Hess, H.F., Saalfeld, S., Rangaraju, V., Clapham, D.E., De Camilli, P., Ryan, T.A. and Lippincott-Schwartz, J., Cell, 188, 1-17, 2025
  • Plasticity-induced actin polymerization in the dendritic shaft regulates intracellular AMPA receptor trafficking. Wong, V.C., Houlihan, P.R., Liu, H., Walpita, D., DeSantis, M.C., Liu, Z. and O'Shea, E.K., Elife, 13, e80622, 2024
  • The SARS-CoV-2 accessory protein Orf3a is not an ion channel, but does interact with trafficking proteins., Houlihan, P.R., Miller, A.N, Matamala, E., Cabezas-Bratesco, D., Lee, G.Y, Cristofori-Armstrong, B., Dilan, T.L, Sanchez-Martinez, S., Matthies, D., Yan, R., Yu, Z., Ren, D., Brauchi, S.E. and Clapham, D.E., Elife, 12, e84477, 2023
  • Employing NaChBac for cryo-EM analysis of toxin action on voltage-gated Na+ channels in nanodisc. Gao, S., Valinsky W.C., On, N.C., Houlihan, P.R., Qu, Q., Liu, L., Pan, X., Clapham, D.E. and Yan, N., Proceedings of the National Academy of Science, 117, 25, 14187-14193, 2020
  • Mitochondrial cardiomyopathies feature increased uptake and diminished efflux of mitochondrial calcium. Houlihan, P.R., Sommakia, S., Deane, S.S., Simcox, J.A., Torres, N.S., Jeong, M.Y., Winge, D.R., Villanueva, C.J. and Chaudhuri, D., Journal of Molecular and Cellular Cardiology, 113, 22-32, 2017
  • Leucine-rich repeat containing 8A (LRRC8A)-dependent volume-regulated anion channel activity is dispensable for T-cell development and function., Platt, C.D., Chou, J., Houlihan, P.R., Badran, Y.R., Kumar, Lalit., Bainter, W., Polianai, P.L., Perez, C.J., Dent, S.Y.R., Clapham, D.E., Benavides, F., and Geha, R.S., Journal of Allergy and Clinical Immunology, 140, 6, 1651-1659, 2017
  • Mitochondria and plasma membrane Ca2+ -ATPase (PMCA) control presynaptic clearance in capsaicin-sensitive rat sensory neurons., Shutov, L.P., Kim M.-S., Houlihan P.R. and Usachev Y.M., Journal of Physiology, 591, 10, 2443-2462, 2013
  • Distinct activation properties of Ca2+/calcineurin-dependent transcription factors NFATc3 and NFATc4 in neurons., Ulrich, J. D., Kim M.-S., Houlihan P.R., Shutov L.P., Mohapatra D.P., Strack S. and Usachev Y.M., Journal of Biological Chemistry, 287, 37594-37609, 2012

Mentoring Experience

  • Janelia Association of Research Scientists early career mentoring program, Janelia Research Campus, Ashburn, VA, 2022, Prepared and led small group discussions and provided one-on-one mentoring for undergraduate and technician level employees.
  • Laboratory Instructor, MBL Physiology Summer Course Summer 2018 Woods Hole Marine Biology Institute. Woods Hole, Massachusetts. Program directors: Dr. Jennifer Lippincott-Schwartz, Dr. Wallace Marshall, and Dr. Rob Philips. Provided hands on training and education regarding the practice and theory of electrophysiology in the context of cell biology.
  • Dr. Aindrila Saha, Janelia Research Campus Summer Undergraduate Program, Ashburn, VA, Summer 2019, Mentored Aindrila in assembling and denoising a patch-clamp electrophysiology rig.
  • Dr. Clarice Aiello, Summer 2018, Mentored Clarice in manipulating the conductance of the calcium activated BK potassium channel.
  • Nathan Bortolini, DDS, Fall 2009, Mentored Nathan during his study of the effects of Drp1 phosphorylation on neuronal susceptibility.

References

  • David E. Clapham, MD, PhD, Aldo R. Castañeda Professor of Cardiovascular Research and Professor emeritus of neurobiology at Harvard Medical School, HHMI Janelia Research Campus, Ashburn, VA, claphamd@hhmi.org, david_clapham@hms.harvard.edu
  • Jennifer Lippincott-Schwartz, PhD, Head, 4D Cellular Physiology, HHMI Janelia Research Campus, Ashburn, VA, lippincottschwartzj@janelia.hhmi.org, sobieskik@janelia.hhmi.org
  • Dipayan Chaudhuri, MD, PhD, Associate Professor of Internal Medicine and Adjunct Associate Professor Biochemistry at the University of Utah, Salt Lake City, UT, dipayan.chaudhuri@hsc.utah.edu
  • Yuriy M. Usachev, PhD, Professor of Neuroscience and Pharmacology, Department of Pharmacology at the University of Iowa, Iowa City, IA, yuriy-usachev@uiowa.edu

Timeline

Research Scientist

Janelia Research Campus
07.2017 - Current

Postdoctoral Research Associate

Boston Children’s Hospital
08.2013 - 07.2017

Graduate Research Assistant

The University of Iowa College of Medicine
08.2006 - 08.2013

Undergraduate Research Assistant

University of Nevada Las Vegas
08.2005 - 05.2006

PhD - Pharmacology

The University of Iowa College of Medicine

BS - Biochemistry

University of Nevada Las Vegas
Patrick Houlihan