Summary
Overview
Work History
Education
Skills
Websites
Timeline
SELECTED PUBLICATIONS
LEADERSHIP & SERVICE
Generic

Richa Khanna

Boston,MA

Summary

Senior cell biologist and biochemist with an experience spanning 10+ years. Interested in challenging research projects with focus on innovation and precision. Expertise in proteomics-based discovery in neurodegenerative disorders, and immunology, and cancer. Expert in mechanism-of-action studies, CRISPR genome editing, quantitative proteomics, and human iPSC differentiation. Adept in innovative experimental design, initiating new projects, securing grants, mentoring teams, and delivering publications. Skilled in fostering collaborations, troubleshooting, driving results, and adapting to evolving research needs and methodologies.

Overview

17
17
years of professional experience

Work History

Postdoctoral Research Fellow

Dana-Farber Cancer Institute
07.2023 - Current

Advisor: Joseph D. Mancias, MD, PhD

  • Developed novel macrophage model elucidating autophagy-mediated iron metabolism in innate immunity (manuscript in preparation)
  • Led industry-academic collaboration evaluating novel autophagy inhibitors for pancreatic cancer therapeutics in vitro and in vivo
  • Validated NCOA4-FTH1 interactions to develop basis for designing inhibitors for ferritinophagy.

Postdoctoral Researcher

Tufts University School of Medicine
09.2020 - 06.2023

Advisor: Malavika Raman, PhD

  • Established iPSC-based skeletal myocyte platform modeling ALS-associated VCP mutations, published in Cell Stem Cell (2022)
  • Reduced myocyte differentiation time from 45 to 30 days through innovative troubleshooting
  • Mapped proteome alterations in ALS using quantitative proteomics, identifying dysregulated pathways
  • Discovered mechanistic roles of VCP adapters in stress granule biology (manuscript in preparation)
  • Generated key preliminary data contributing to successful Muscular Dystrophy Association grant (2023) Grant ID: 1070479 https://doi.org/10.55762/MDA.1070479.pc.gr.174098
  • Managed lab operations including training, workflow standardization, and inventory

Research Associate

CSIR-CCMB
01.2019 - 01.2020

Advisor: Manjula Reddy, PhD

  • Identified immune regulatory role of human homolog of bacterial carbohydrate deacetylase
  • Purified SARS-CoV-2 antigens supporting rapid antigen detection test development to assist state-wide efforts to improve diagnosis

PhD Graduate Student

CSIR-CCMB
01.2010 - 01.2019

Advisor: Veena K. Parnaik, PhD

  • Revealed unprecedented role of ubiquitin-mediated protestasis in nuclear envelopathies, resulting in 4 peer-reviewed publications
  • Standardized biochemical assays and IP-MS pipeline for ubiquitination studies
  • Presented at 10+ international/national conferences

Master's Researcher

National Centre for Cell Sciences
01.2009 - 01.2010

Advisor: Nibedita Lenka, PhD

  • Differentiated murine ES cells into cardiac and neuronal lineages studying folic acid in embryonic development
  • Identified a positive role supporting folate metabolism in neuronal and cardiac differentiation


Education

PhD - Cell Biology and Biochemistry

CSIR-CCMB
02.2019

Master's - Biotechnology

Savitribai Phule Pune University
06.2010

B.Sc. - Biochemistry

University of Delhi
06.2008

Skills

    Molecular biology

  • Nucleic acid isolation, qRT-PCR
  • CRISPR/Cas9 genome editing techniques
  • Protein Analysis and Biochemistry:

  • Westen blotting, Protein expression and Purification, E:LISA
  • Whole cell proteomics TMT pro 18-plex, IP-MS, Binding assays
  • Cell Biology and Culture:

  • Human iPSC/mES cells, cancer cell culture, murine primary cell isolation, cell purification, and culture
  • Cell growth and proliferation (2D and 3D), colony forming assays, drug dose dependent response
  • HiPSC-derived neuron and myocyte expertise
  • Experienced in lentivirus generation and transduction
  • Equipment and Instrumentation:

    Thermo Scientific Microplate dispenser, Tecan D300e drug dispenser, Incucyte®S3, Flow cytometry, Plate reader, Epifluorescence and Confocal Microscopy

    Animal Studies:

  • Macrophage isolation, tissue/blood collection and processing for proteomics, and western blots
  • Data Analysis and Software:

  • Proteomics data analysis and visualization
  • Microsoft Office, Photoshop, Illustrator, GraphPad, Depmap, SnapGene

Timeline

Postdoctoral Research Fellow

Dana-Farber Cancer Institute
07.2023 - Current

Postdoctoral Researcher

Tufts University School of Medicine
09.2020 - 06.2023

Research Associate

CSIR-CCMB
01.2019 - 01.2020

PhD Graduate Student

CSIR-CCMB
01.2010 - 01.2019

Master's Researcher

National Centre for Cell Sciences
01.2009 - 01.2010

PhD - Cell Biology and Biochemistry

CSIR-CCMB

Master's - Biotechnology

Savitribai Phule Pune University

B.Sc. - Biochemistry

University of Delhi

SELECTED PUBLICATIONS

  • Pantazis et al. A reference human induced pluripotent stem cell line for large-scale collaborative studies. Cell Stem Cell, 2022.
  • Johnson MA, Klickstein JA, Khanna R, et al. Neurobiol Dis, 2022.
  • Khanna R, Krishnamoorthy V, Parnaik VK. E3 ubiquitin ligase RNF123 targets lamin B1 and lamin-binding proteins. FEBS J, 2018.
  • Krishnamoorthy V, Khanna R, Parnaik VK. HECW2 mediates proteasomal degradation of HP1 isoforms. BBRC, 2018.
  • Chaturvedi P, Khanna R, Parnaik VK. RNF123 mediates degradation of heterochromatin proteins in lamin A/C knock-down cells. PLoS One, 2012.

LEADERSHIP & SERVICE

  • Organized India's first national postdoctoral meeting and International Congress of Cell Biology (2018)
  • Organized events with Tufts Postdoctoral Association
  • Freelance Scientific Editor, Cactus Communications (2018–2020): Edited 20+ manuscripts
  • Manuscript Reviewer, Cell Communication and Signaling (invited)
Richa Khanna