Intro Comp Genomics
Wenyu Liang
Bioinformatician
Santa Cruz,CA
Summary
Applied Bayesian Machine Learning Experienced bioinformatics graduate student with six years of diverse experience in biomedical fields, spanning from cancer-related multi-omics data to human genome research. Acquired a solid foundation in medical and data analysis through undergraduate studies, enriched by practical work experience from internships, and enhanced by exposure to cutting-edge genome research advancements during graduate studies.
Overview
3
3
years of professional experience
14
14
years of post-secondary education
Work History
Graduate Student Researcher
Dr. Sofie Salama
Santa Cruz, CA
10.2021 - Current
- Conducted extensive SNP analysis and structural variation analysis in the 1q21.1 region
- Developed a pipeline for highly contiguous de novo dual assembly of the repetitive region 1q21.1 using Nanopore sequencing data
- Created a custom program for polishing and evaluating the assembly, benchmarking the results with the Human Pangenome Reference Consortium (HPRC)
Bioinformatics Intern
Dr. Yue Jiang
10.2020 - 12.2020
- Cultivating proficiency in analyzing diverse types of sequencing data, including RNA-seq, single-cell data, and ChIP-seq.
- Batch processed patient RNA-seq data, integrating top-performing methods to identify candidate fusion transcripts.
- Visualized and presented the results, employing clear and engaging graphics to effectively communicate complex findings to both technical and non-technical people
Data Analyst Intern
Dr. Guan Luo
Beijing
09.2020 - 11.2020
- Integrated and preprocessed large-scale patient data, including demographic information, medical history, and treatment records, ensuring data quality and consistency.
- Developed and fine-tuned multiple machine learning models, including regression, decision trees, and ensemble methods, to predict the level of response to various treatment options.
- Conducted rigorous model evaluation and validation using cross-validation techniques, ensuring the robustness and generalizability of the predictions.
Education
Bachelor of Engineering - Biomedical Engineering
Harbin Medical University
09.2017 - 6 2021
Master of Science - Bioinformatics
University of Santa Cruz
01.2009 - Current
Skills
Python, R, Linux, C, MySQL
undefinedSoftware
Adv Comp Genomics
Evol Genomics
Comp Sys and C Prog
Applied Bayesian
Machine Learning
Applied RNA Bioinformatics
Timeline
Graduate Student Researcher
Dr. Sofie Salama
10.2021 - Current
Bioinformatics Intern
Dr. Yue Jiang
10.2020 - 12.2020
Data Analyst Intern
Dr. Guan Luo
09.2020 - 11.2020
Bachelor of Engineering - Biomedical Engineering
Harbin Medical University
09.2017 - 6 2021
Master of Science - Bioinformatics
University of Santa Cruz
01.2009 - Current
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