Manali Singha
Ph.D Student
Baton Rouge,LA
Summary
The amount of biological data is increasing rapidly. This opportunity is giving to analyze more relevant biological problems using data science. Experience in data mining and extracting essential features of the data to implement machine learning and deep learning models provide how to answer those biological problems.
Overview
6
6
years of professional experience
Work History
Reaserch Assistant
Dr. Michal Brylinski, CSBG-LSU
Baton Rouge, LA
06.2019 - Current
- Project1: Predicting the growth rate of Cancer cells (GR50) in the presence of single drug by integrating the multi-omics data and implementing Graph Convolution Neural Network(GCN).
- Project2: The drug-target identification by Multilayer perceptron (MLP) and Graph Autoencoder(GAE)
- Project3: Predicting the effect of drug-combination on Cancer cell growths by implementing Graph Neural Network (GNN)
Teaching Assistant
Department Of Biological Sciences, LSU
Baton Rouge, LA
08.2017 - 05.2019
- Supported student learning objectives through personalized and small group assistance to support classroom instruction.
- The subjects are BIOL1208 and BIOL1209
Project Fellow
Department Of Neonatology, SSKM Hospital
Kolkata, West Bengal
04.2015 - 06.2017
- Worked on the project to find chromosomal abnormalities related with mental retardation such as Down syndrome, Patau syndrome, Edward syndrome, ambiguous genitalia etc.
Education
Ph.D. - Computational System Biology
Louisiana State University And A&M College
Baton Rouge, LAMaster of Science - Huaman Genetics
West Bengal University of Health Sciences
Kolkata , IndiaBachelor of Science - Genetics
West Bengal University of Teachnology
Kolkata , IndiaSkills
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Language Skills
English, Bengali, Hindi
Hobbies
- Music
- Reading books
References
Upon request
- Dr. Michal Brylinski, Associate Professor, Department of Biological Science, Louisiana State University, Baton Rouge, LA, USA
- Dr. Brant C. Faircloth, Department of Biological Science, Louisiana State University, Baton Rouge, LA, USA
- Dr. Naohiro Kato, Associate Professor, Department of Biological Science, Louisiana State University, Baton Rouge, LA, USA
- Dr. Limeng Pu, IT consultant, Department of Biological Science, Louisiana State University, Baton Rouge, LA, USA
Publications
1. Shi W, Lemoine JM, Shawky MA, Singha M, Pu L, Yang S, Ramanujam J, Brylinski M. (2020) BionoiNet: Ligand-binding site classification with off-the-shelf deep neural network. Bioinformatics 36 (10): 3077-3083.
2. Govindaraj RG, Naderi M, Singha M, Lemoine J, Brylinski M. (2018) Large-scale computational drug repositioning to find treatments for rare diseases. NPJ Syst Biol Appl 4: 13.
3. Singha M, Pu L, Busch K, Wu HC, Ramanujam J, Brylinski M. GraphGR: A graph neural network to predict the effect of pharmacotherapy on the cancer cell growth. Submitted (Bioarchive)
Quote
Wanderer, there is no path, the path is made by walking.
Antonio Machado
Funding
Research Assistantship is funded by National Institute of General Medical Sciences for the R35 Maximizing Investigators Research Award (MIRA)
Timeline
Reaserch Assistant
Dr. Michal Brylinski, CSBG-LSU
06.2019 - Current
Teaching Assistant
Department Of Biological Sciences, LSU
08.2017 - 05.2019
Project Fellow
Department Of Neonatology, SSKM Hospital
04.2015 - 06.2017
Bachelor of Science - Genetics
West Bengal University of Teachnology
Master of Science - Huaman Genetics
West Bengal University of Health Sciences
Ph.D. - Computational System Biology
Louisiana State University And A&M College
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