Summary
Overview
Work History
Education
Skills
Publications
Communicated Research Papers
Conference Research Papers/Posters/Oral presentations
Professional References
Timeline
Generic

NEHA THAKRE

San Diego,USA

Summary

I am an ambitious, solution oriented and self motivated postdoctoral scholar with a strong background in Molecular Biology, Synthetic biology and microbiology with a deep understanding of DNA assemblies and genome editing tools, RNAi & CRISPR -Cas9 systems. I aspire to be a successful independent scientist focused working towards understanding and developing effective experimental designs, assays and user-friendly products/protocols to have a meaningful impact in real-world.

Overview

6
6
years of professional experience

Work History

Post-doctoral Fellow

University Of California, San Diego, CA, USA
San Diego , CA
2021.05 - Current
  • Developing a new CRISPR-based technology termed precision-guided sterile insect technique (pgSIT) in Aedes albopictus and Anopheles gambiae for mosquitoes population control.
  • Collaborated with several postdocs and professionals to advance research and gain deeper understanding of gene editing and DNA assembly tools.
  • Using DNA assembly tools- Gibson cloning , Golden gate cloning, vector designing to link multiple DNA elements, PCR, restriction digestions, Sanger sequencing to generate genetic sexing mosquito strains.
  • Maintained records of research findings with analysis and evaluation of results.

Post-doctoral Fellow

The University Of Arizona, Tucson, AZ, USA
Tucson , AZ
2019.05 - 2021.04
  • Used CRISPR/Cas9 system and embryonic microinjections to disrupt AaegILP2, AaegILP3 and AaegILP6 to generate respective heterozygous and homozygous Aedes aegyp6 ILP knock-out mosquito line.
  • Conducted RT-PCR and western blot analysis to access the impact of the individual AaegILP knockouts on essential metabolic regulators (Pank,CoA)
  • Colorimetric assay to quantify CoA levels
  • 5'RACE PCR to evaluate Pank splicing variants
  • Authored professional scientific papers for publishing in peer-reviewed journals.

Assistant Research Scientist

The University Of Arizona, Tucson, AZ, USA
Tucson , AZ
2018.08 - 2019.12
  • Analysis, designed, synthesis and labelling of dsRNA candidates to execute RNAi bioassays.
  • Confocal fluorescence microscopy and fluorometry to track in-vivo dsRNA delivery in plant system.
  • Development of a quantitative real-time PCR assay for estimating of CLso bacterial titer, dsRNA in planta and insect-vector
  • Utilized expertise in molecular biology to execute cloning, DNA/RNA extractions, PCR, qPCR, rolling circular amplification and western blotting for effective plant pathogen diagnosis.
  • Screening various formulations for enhanced foliar application
    and phloem delivery of dsRNA molecules

Research Associate

National Centre For Cell Sciences (NCCS), Pune
Pune , Maharashtra
2017.01 - 2018.01
  • Routine ovarian cancer cell line and primary cell line culture maintenance
  • Set up equipment, organized inventory and maintained facilities.
  • Isolation of ovarian cancer cell line/serum/urine/ascites derived exosomes by differential ultracentrifugation method, characterization of isolated exosomes by Dynamic Light Scattering analysis and Field Emission Scanning electron microscopy
  • PKH labeling for exosomes and time-lapse confocal imaging assays.
  • miRNA/mRNA isolation, library preparation, and illumina sequencing

Education

Ph.D. - Biotechnology

Rashtrasant Tukadoji Maharaj Nagpur University
Ravindranath Tagore Marg, Nagpur 440001, MS, India
03.2017

Master of Science - Biotechnology

Bangalore University, Bangalore, Karnataka, India
Mysore Rd, Jnana Bharathi, Bengaluru 560056, India
06.2008

Bachelor of Science - Botany, Chemistry, Zoology

Rashtrasant Tukadoji Maharaj Nagpur University
Ravindranath Tagore Marg, Nagpur 440001, MS, India
06.2006

Skills

Molecular biology: DNA/RNA/plasmid extractions, Sanger sequencing, Cloning (Gibson assembly, golden gate), PCR, RT-PCR, qPCR, 5’ RACE PCR, RCA, ITS-PCR, Loop-mediated isothermal amplification for HLB diagnosis, designing duplex and multiplex PCR, In-vitro cleavage assay, PCR- restriction digestion based mutagenesis assay, northern and western blotting.

Genome editing tools: Embryonic microinjections, CRISPR/Cas9 system, RNAi , sgRNA/dsRNA designing, synthesis and labeling, Piggyback vector design for multi DNA fragment assembly

Analytical Chemistry: Laser technology, Fluorometry, High performance liquid chromatography (HPLC), Liquid chromatography- mass spectrometry(LC-MS) Orbitrap

Cancer Biology: Ovarian cancer and primary cell culture, differential ultracentrifugation based Exosome isolation, exosomes mRNA and miRNA purification, PKH labeling of EVs, Time lapse Confocal microscopy, high-end fluorescence microscopy, Scratch assay

Microbiological Techniques: Bacteria, endophyte bacterial, Fungi (Phytohthora and Trichoderma) isolation, Identification, and maintenance, Antimicrobial profiling & Heavy metal sensitivity profiling of microbial strains, Basic Staining Techniques (Spores Staining, Negative Staining), Cell-viability assay, Sterilization Techniques, Centrifugation.

Immunological Techniques: Immunological assay e.g. ELISA, RIA.

Bioinformatics : BLAST, FASTA, ClustalW, Phylogenetic analysis & vector designing tools

Publications

  • Thakre, N.; Simão-Gurge, R.M.; Strickland, J.; Isoe, J.; Delacruz, L.R.; Torrevillas, B.K.; Rodriguez, A.M.; Riehle, M.A.; Luckhart, S. Activation of Anopheles stephensi Pantothenate Kinase and Coenzyme A Biosynthesis Reduces Infection with Diverse Plasmodium Species in the Mosquito Host. Biomolecules 2021, 11, 807. h[ps://doi.org/10.3390/biom11060807
  • A.K. Das, S. Nerkar, N. Gawande, N. Thakre and A. Kumar (2019) SCAR marker for Phytophthora nicotianae and a multiplex PCR assay for simultaneous detection of P. nicotianae and Candidatus Liberibacter asiaticus in citrus. Journal of Applied Microbiology, Volume 127, Issue 4. doi:10.1111/jam.14392
  • A.K. Das, Sagar Nerkar, Neha Thakre & Ashok Kumar (2017) First report of an atypical strain of Phytophthora inundata causing Kinnow mandarin decline in India, Canadian Journal of Plant Pathology, 39:3, 365-372.DOI: 10.1080/07060661.2017.1364296
  • Das AK, Nerkar S, Thakre N, Kumar A. (2016). First report of 'Candidatus Phytoplasma trifolii' (16SrVI group) in Nagpur mandarin (Citrus reticulata) showing huanglongbing symptoms in central India. New Disease Reports 34, 15. h[p://dx.doi.org/10.5197/ j.2044-0588.2016.034.015
  • Thakre, N.A., Shanware, A.S. (2015) Promising Biological Indicator of Heavy Metal Pollution: Bioluminescent Bacterial Strains Isolated and Characterized from Marine Niches of Goa, India. Indian J Microbiol 55, 327–332. h[ps://doi.org/10.1007/s12088-015-0531-y
  • Thakre, N.A., Shanware, A.S. (2014) Screening of Bioluminescent Bacterial strains for evolution of Novel Toxicity Sensing Beads. Conference: International Electronic Conference on Sensors and Applications. DOI:10.3390/ecsa-1-a001
  • Arti Shanware, Neha Thakre, Sunil Pande. (2013) Isolation and characterization of novel marine luminescent bacteria from Diu beach, India, Journal of Pharmacy Research,Volume 7, Issue 6, Pages 529-533, ISSN 0974-6943, h[ps://doi.org/10.1016/j.jopr.2013.05.019

Communicated Research Papers

  • Completed drafting and submission in process for research paper entitled “Engineered confinable population suppression system in Anopheles Gambiae”(under supervision of Prof. Akbari)
  • Communicated to Insect Biochemistry and Molecular Biology, research paper entitled “Manipulation of pantothenate kinase in Anopheles stephensi suppresses pantothenate levels with minimal impacts on mosquito fitness.” (under supervision of Prof. Riehle)
  • Completed drafting and submission in process for Journal of Pest Science, research paper entitled “Optimization of laser assisted delivery of different dsRNA lengths to tomato plants using different adjuvants corroborated by an RNA-interference bioassay” (under supervision of Prof. Brown)

Conference Research Papers/Posters/Oral presentations

  • Research paper published in the Asiatic journal of biotechnology resource, international quarterly journal of bioscience special issue EBMBBHL, volume 4 issue 4 on the topic entitled as “Novel bioluminescent beads for Monitoring phenolic pollutant”
  • Research paper entitled “Detection and characterization of a novel Bacterium Vibrio campbellii from marine fish Leiognathus equulus” has been accepted for ‘BTBT-2013’ Conference at Mauritius and the full-length paper would be published in Conference proceedings.
  • Research paper entitled “Assessing upshot of pollution on bioluminescent bacterial community” is accepted for GOLD-CT conference organized by North Maharashtra University, Jalgoan and the full-length paper would be published in. Journal of Advances in Science and Technology. ISSN No. 0971-9563.
  • Poster Presentation on topic entitled “Isolation and Characterization of Exosomes derived from Ovarian Cancer cell lines” in 3rd Mini Symposium on Cell biology organized by NCCS,Pune.
  • Bagged second prize for poster presentation on topic entitled “ Trichoderma harzianum native strain NRCfBA-44 : isolation, characterization and formulation development for biological control of Phytophthora root rot of citrus” during National symposium on sustainable citrus production: Way Forward organized by Indian Society for Citriculture (ISC), Nagpur at Central Citrus Research Institute, Nagpur, Maharashtra, India from 27-29 November , 2015.
  • Won Best Paper Award for oral presentation on topic entitled “Bioluminescent strains: A potential toxicity biomarker” in the National Conference on “Biomarkers in Health & Diseases” held on 21st -22nd February, 2013.
  • Bagged second prize for poster presentation for topic entitled “Development of Prospective Bio- beads for Detection of Lead Contamination” during regenerations-2013 held at Indian Institute of Technology, Bombay.

Professional References

Dr. Michael Riehle

(Post-doctoral Advisor)

Professor
Department of Entomology University of Arizona Forbes 410

1140 E. South Campus Drive Tucson,

Arizona 85721-0036

Phone: 520-626-8500
Fax: 520-621-1150

Email: mriehle@ag.arizona.edu


Dr. Judith Brown

(Post-doctoral Advisor)

Professor
School of Plant Sciences

1140 E. South Campus Dr.

Forbes Bld. #303

The University of Arizona Tucson,

AZ 85721, USA
Office Phone : 520-621-1402

Lab Phone : 520-621-1230
Cell Phone : 520-490-2109

Email: jbrown@ag.arizona.edu


Dr. Arti Shanware

(PhD Supervisor)

Assistant Professor,
Rajiv Gandhi Biotechnology Centre,

L.I.T Premises, R.T.M. Nagpur University
Nagpur - 440033 (M.S)
Ph No: +91-9823018963
E-mail: artishanware@gmail.com


Dr. Narendra Y. Kadoo

(Master’s advisor)
Scientist,
Plant Molecular Biology Group, Biochemistry Division,

National Chemical Laboratory,

Pune 411008, India
Ph: +91-20-25902247
Fax: +91-20-25902648

E-mail: ny.kadoo@ncl.res.in

Timeline

Post-doctoral Fellow

University Of California, San Diego, CA, USA
2021.05 - Current

Post-doctoral Fellow

The University Of Arizona, Tucson, AZ, USA
2019.05 - 2021.04

Assistant Research Scientist

The University Of Arizona, Tucson, AZ, USA
2018.08 - 2019.12

Research Associate

National Centre For Cell Sciences (NCCS), Pune
2017.01 - 2018.01

Ph.D. - Biotechnology

Rashtrasant Tukadoji Maharaj Nagpur University

Master of Science - Biotechnology

Bangalore University, Bangalore, Karnataka, India

Bachelor of Science - Botany, Chemistry, Zoology

Rashtrasant Tukadoji Maharaj Nagpur University
NEHA THAKRE